name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
S0_scaffold_40_curated_trna_2
unknown
|
Not on your lists |
comp(2220..2292)
|
transferRNA Ala
|
|
S0_scaffold_40_curated_trna_1
unknown
|
Not on your lists |
comp(2305..2378)
|
transferRNA Ile
|
|
S0_scaffold_40_curated_16S_1
unknown
|
Not on your lists |
comp(2535..4088)
|
16S ribosomal RNA (16S rRNA)
|
|
S0_scaffold_40_curated_1
RBG_13_Actinobacteria_63_9_curated, Rubrobacteria, Actinobacteria, Bacteria
|
Not on your lists |
comp(2636..2890)
|
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YDC4_9DELT
hypothetical protein
Tax=RBG_13_Actinobacteria_63_9_curated
|
|
S0_scaffold_40_curated_2
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4553..5887
|
ErfK/YbiS/YcfS/YnhG family protein id=2128245 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
rbh
ErfK/YbiS/YcfS/YnhG family protein
rbh
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:ABL00788.1}; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
|
|
S0_scaffold_40_curated_3
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5925..8348)
|
Penicillin-binding protein, 1A family id=3277627 bin=GWF2_Geobacter_54_21 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
rbh
1A family penicillin-binding protein
rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
|
|
S0_scaffold_40_curated_4
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8551..9762
|
Putative PAS/PAC sensor protein id=2128234 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
rbh
PAS/PAC sensor protein
rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
|
|
S0_scaffold_40_curated_5
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9952..10755)
|
Formamidopyrimidine-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_00103}; Short=Fapy-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000255|HAMAP-Rule:MF_00103};; DNA-(apurinic or apyrimidinic site) lyase MutM {ECO:0000255|HAMAP-Rule:MF_00103}; Short=AP lyase MutM {ECO:0000255|HAMAP-Rule:MF_00103};; EC=4.2.99.18 {ECO:0000255|HAMAP-Rule:MF_00103};; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
Formamidopyrimidine-DNA glycosylase n=2 Tax=Geobacter metallireducens RepID=FPG_GEOMG
rbh
mutM; formamidopyrimidine-DNA glycosylase
rbh
|
|
S0_scaffold_40_curated_6
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10860..11543)
|
Protoporphyrinogen oxidase (EC:1.3.3.4)
Protoporphyrinogen oxidase n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9LYY8_GEODF
Protoporphyrinogen oxidase {ECO:0000313|EMBL:ACM18720.1}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
|
|
S0_scaffold_40_curated_7
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11821..14325
|
Sensor histidine kinase response regulator, Cache_1, PAS and PAS domain-containing n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EBI9_GEOBB
rbh
Cache/PAS domain-containing sensor histidine kinase response regulator
rbh
Sensor histidine kinase response regulator, Cache_1, PAS and PAS domain-containing {ECO:0000313|EMBL:ACH37458.1}; TaxID=404380 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622).;"
|
|
S0_scaffold_40_curated_8
Anabaena sp. 90, Anabaena, Nostocales, Cyanobacteria, Bacteria
|
Not on your lists |
comp(14389..15162)
|
Uncharacterized protein n=1 Tax=Anabaena sp. 90 RepID=K7WV68_9NOST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFW94461.1}; TaxID=46234 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Anabaena.;" source="Anabaena sp. 90.;"
|
|
S0_scaffold_40_curated_9
unknown
|
Not on your lists |
comp(15402..16316)
|
This feature has no annotations |
|
S0_scaffold_40_curated_10
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16723..18261
|
Bifunctional transcriptional activator/DNA repair enzyme AlkA n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IJN7_9FIRM
rbh
AraC family transcriptional regulator
rbh
Tax=GWC2_Geobacteraceae_58_44_curated
|
|
S0_scaffold_40_curated_11
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18239..18739
|
Methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IG19_9FIRM
methylated-DNA/protein-cysteine methyltransferase
Tax=GWC2_Geobacteraceae_58_44_curated
|
|
S0_scaffold_40_curated_12
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria
|
Not on your lists |
comp(18804..19775)
|
Alpha/beta hydrolase fold-3 domain protein id=4781588 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
rbh
Alpha/beta hydrolase fold-3 domain protein
rbh
Tax=GWC2_Nitrospirae_56_14_curated
|
|
S0_scaffold_40_curated_13
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria
|
Not on your lists |
comp(20035..20769)
|
Uncharacterized protein n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M464_GEODF
hypothetical protein
Tax=GWC2_Nitrospirae_57_9_curated
|
|
S0_scaffold_40_curated_14
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20986..21633)
|
Signal peptidase I {ECO:0000256|RuleBase:RU362042, ECO:0000313|EMBL:GAM10905.1}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
signal peptidase I (EC:3.4.21.89)
rbh
Signal peptidase I, Serine peptidase, MEROPS family S26A n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G788_GEOUR
rbh
|
|
S0_scaffold_40_curated_15
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21656..21835)
|
Uncharacterized protein {ECO:0000313|EMBL:GAM10906.1}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
|
|
S0_scaffold_40_curated_16
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21819..22385)
|
RNA polymerase, sigma-24 subunit, RpoE n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G789_GEOUR
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase, sigma-24 subunit, RpoE {ECO:0000313|EMBL:ABQ27657.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
|
|
S0_scaffold_40_curated_17
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22560..23171)
|
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GBQ2_GEOUR
rbh
hypothetical protein
rbh
Uncharacterized protein {ECO:0000313|EMBL:ABQ24991.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
|
|
S0_scaffold_40_curated_18
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23430..25229)
|
Beta-lactamase id=4678953 bin=GWC2_Geobacteraceae_55_20 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
rbh
beta-lactamase
rbh
Tax=GWC2_Geobacteraceae_55_20_curated
|
|
S0_scaffold_40_curated_19
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(25399..25713)
|
Tax=GWC2_Geobacteraceae_53_11_curated
|
|
S0_scaffold_40_curated_20
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea
|
Not on your lists |
comp(25784..26059)
|
UPI0003D1A02A related cluster n=1 Tax=unknown RepID=UPI0003D1A02A
Holliday junction resolvasome, DNA-binding subunit {ECO:0000313|EMBL:ETA68142.1}; TaxID=1090322 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus tindarius DSM 2278.;"
Pathogenicity locus
|
|
S0_scaffold_40_curated_21
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria
|
Not on your lists |
comp(26171..26767)
|
NAD(P)H dehydrogenase (Quinone) n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDM6_GEOUR
NAD(P)H oxidoreductase YRKL {ECO:0000313|EMBL:GAE87985.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
NAD(P)H dehydrogenase (quinone)
|
|
S0_scaffold_40_curated_22
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27051..27872)
|
4Fe-4S ferredoxin, iron-sulfur binding domain protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GE72_GEOUR
rbh
4Fe-4S ferredoxin
rbh
4Fe-4S ferredoxin, iron-sulfur binding domain protein {ECO:0000313|EMBL:ABQ25727.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
|
|
S0_scaffold_40_curated_23
RBG_19FT_COMBO_Chloroflexi_49_13_curated, Chloroflexi, Bacteria
|
Not on your lists |
comp(27898..28947)
|
Alpha/beta hydrolase fold family protein n=1 Tax=Microcystis aeruginosa TAIHU98 RepID=L7ED63_MICAE
hypothetical protein
Tax=RBG_19FT_COMBO_Chloroflexi_49_13_curated
|
|
S0_scaffold_40_curated_24
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(29046..30314)
|
Major facilitator superfamily MFS_1 n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GBQ8_GEOUR
rbh
major facilitator transporter
rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABQ24997.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
|
|
S0_scaffold_40_curated_25
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(30417..31130)
|
4Fe-4S ferredoxin, iron-sulfur binding domain protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GC55_GEOUR
rbh
4Fe-4S ferredoxin
rbh
4Fe-4S ferredoxin, iron-sulfur binding domain protein {ECO:0000313|EMBL:ABQ24838.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
|
|
S0_scaffold_40_curated_26
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(31243..31734)
|
YbaK/prolyl-tRNA synthetase associated region n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GE67_GEOUR
YbaK/prolyl-tRNA synthetase associated domain-containing protein
Tax=GWC2_Geobacteraceae_58_44_curated
|
|
S0_scaffold_40_curated_27
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(31734..32639)
|
Beta-lactamase domain protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7A3_GEOUR
rbh
beta-lactamase domain-containing protein
rbh
Beta-lactamase domain protein {ECO:0000313|EMBL:ABQ27671.1}; Flags: Precursor;; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
|