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S0_scaffold_40_curated

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Displaying items 1-30 of 167 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S0_scaffold_40_curated_trna_2
unknown

Not on your lists

comp(2220..2292)
DNA (73bp)
transferRNA Ala
S0_scaffold_40_curated_trna_1
unknown

Not on your lists

comp(2305..2378)
DNA (74bp)
transferRNA Ile
S0_scaffold_40_curated_16S_1
unknown

Not on your lists

comp(2535..4088)
DNA (1554bp)
16S ribosomal RNA (16S rRNA)
S0_scaffold_40_curated_1
RBG_13_Actinobacteria_63_9_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2636..2890)
DNA (255bp) protein (85aa)
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YDC4_9DELT
hypothetical protein
Tax=RBG_13_Actinobacteria_63_9_curated
S0_scaffold_40_curated_2
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4553..5887
DNA (1335bp) protein (445aa)
ErfK/YbiS/YcfS/YnhG family protein id=2128245 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
ErfK/YbiS/YcfS/YnhG family protein rbh
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:ABL00788.1}; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
S0_scaffold_40_curated_3
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5925..8348)
DNA (2424bp) protein (808aa)
Penicillin-binding protein, 1A family id=3277627 bin=GWF2_Geobacter_54_21 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good rbh
1A family penicillin-binding protein rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_40_curated_4
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8551..9762
DNA (1212bp) protein (404aa)
Putative PAS/PAC sensor protein id=2128234 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
PAS/PAC sensor protein rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_40_curated_5
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9952..10755)
DNA (804bp) protein (268aa)
Formamidopyrimidine-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_00103}; Short=Fapy-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000255|HAMAP-Rule:MF_00103};; DNA-(apurinic or apyrimidinic site) lyase MutM {ECO:0000255|HAMAP-Rule:MF_00103}; Short=AP lyase MutM {ECO:0000255|HAMAP-Rule:MF_00103};; EC=4.2.99.18 {ECO:0000255|HAMAP-Rule:MF_00103};; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
Formamidopyrimidine-DNA glycosylase n=2 Tax=Geobacter metallireducens RepID=FPG_GEOMG rbh
mutM; formamidopyrimidine-DNA glycosylase rbh
S0_scaffold_40_curated_6
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10860..11543)
DNA (684bp) protein (228aa)
Protoporphyrinogen oxidase (EC:1.3.3.4)
Protoporphyrinogen oxidase n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9LYY8_GEODF
Protoporphyrinogen oxidase {ECO:0000313|EMBL:ACM18720.1}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
S0_scaffold_40_curated_7
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11821..14325
DNA (2505bp) protein (835aa)
Sensor histidine kinase response regulator, Cache_1, PAS and PAS domain-containing n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EBI9_GEOBB rbh
Cache/PAS domain-containing sensor histidine kinase response regulator rbh
Sensor histidine kinase response regulator, Cache_1, PAS and PAS domain-containing {ECO:0000313|EMBL:ACH37458.1}; TaxID=404380 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622).;"
S0_scaffold_40_curated_8
Anabaena sp. 90, Anabaena, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(14389..15162)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Anabaena sp. 90 RepID=K7WV68_9NOST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFW94461.1}; TaxID=46234 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Anabaena.;" source="Anabaena sp. 90.;"
S0_scaffold_40_curated_9
unknown

Not on your lists

comp(15402..16316)
DNA (915bp) protein (305aa)

This feature has no annotations

S0_scaffold_40_curated_10
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16723..18261
DNA (1539bp) protein (513aa)
Bifunctional transcriptional activator/DNA repair enzyme AlkA n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IJN7_9FIRM rbh
AraC family transcriptional regulator rbh
Tax=GWC2_Geobacteraceae_58_44_curated
S0_scaffold_40_curated_11
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18239..18739
DNA (501bp) protein (167aa)
Methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IG19_9FIRM
methylated-DNA/protein-cysteine methyltransferase
Tax=GWC2_Geobacteraceae_58_44_curated
S0_scaffold_40_curated_12
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(18804..19775)
DNA (972bp) protein (324aa)
Alpha/beta hydrolase fold-3 domain protein id=4781588 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA rbh
Alpha/beta hydrolase fold-3 domain protein rbh
Tax=GWC2_Nitrospirae_56_14_curated
S0_scaffold_40_curated_13
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(20035..20769)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M464_GEODF
hypothetical protein
Tax=GWC2_Nitrospirae_57_9_curated
S0_scaffold_40_curated_14
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20986..21633)
DNA (648bp) protein (216aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042, ECO:0000313|EMBL:GAM10905.1}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
signal peptidase I (EC:3.4.21.89) rbh
Signal peptidase I, Serine peptidase, MEROPS family S26A n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G788_GEOUR rbh
S0_scaffold_40_curated_15
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21656..21835)
DNA (180bp) protein (60aa)
Uncharacterized protein {ECO:0000313|EMBL:GAM10906.1}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
S0_scaffold_40_curated_16
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21819..22385)
DNA (567bp) protein (189aa)
RNA polymerase, sigma-24 subunit, RpoE n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G789_GEOUR
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase, sigma-24 subunit, RpoE {ECO:0000313|EMBL:ABQ27657.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
S0_scaffold_40_curated_17
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22560..23171)
DNA (612bp) protein (204aa)
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GBQ2_GEOUR rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABQ24991.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
S0_scaffold_40_curated_18
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23430..25229)
DNA (1800bp) protein (600aa)
Beta-lactamase id=4678953 bin=GWC2_Geobacteraceae_55_20 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria rbh
beta-lactamase rbh
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_40_curated_19
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25399..25713)
DNA (315bp) protein (105aa)
Tax=GWC2_Geobacteraceae_53_11_curated
S0_scaffold_40_curated_20
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(25784..26059)
DNA (276bp) protein (92aa)
UPI0003D1A02A related cluster n=1 Tax=unknown RepID=UPI0003D1A02A
Holliday junction resolvasome, DNA-binding subunit {ECO:0000313|EMBL:ETA68142.1}; TaxID=1090322 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus tindarius DSM 2278.;"
Pathogenicity locus
S0_scaffold_40_curated_21
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26171..26767)
DNA (597bp) protein (199aa)
NAD(P)H dehydrogenase (Quinone) n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDM6_GEOUR
NAD(P)H oxidoreductase YRKL {ECO:0000313|EMBL:GAE87985.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
NAD(P)H dehydrogenase (quinone)
S0_scaffold_40_curated_22
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27051..27872)
DNA (822bp) protein (274aa)
4Fe-4S ferredoxin, iron-sulfur binding domain protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GE72_GEOUR rbh
4Fe-4S ferredoxin rbh
4Fe-4S ferredoxin, iron-sulfur binding domain protein {ECO:0000313|EMBL:ABQ25727.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
S0_scaffold_40_curated_23
RBG_19FT_COMBO_Chloroflexi_49_13_curated, Chloroflexi, Bacteria

Not on your lists

comp(27898..28947)
DNA (1050bp) protein (350aa)
Alpha/beta hydrolase fold family protein n=1 Tax=Microcystis aeruginosa TAIHU98 RepID=L7ED63_MICAE
hypothetical protein
Tax=RBG_19FT_COMBO_Chloroflexi_49_13_curated
S0_scaffold_40_curated_24
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29046..30314)
DNA (1269bp) protein (423aa)
Major facilitator superfamily MFS_1 n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GBQ8_GEOUR rbh
major facilitator transporter rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABQ24997.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
S0_scaffold_40_curated_25
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30417..31130)
DNA (714bp) protein (238aa)
4Fe-4S ferredoxin, iron-sulfur binding domain protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GC55_GEOUR rbh
4Fe-4S ferredoxin rbh
4Fe-4S ferredoxin, iron-sulfur binding domain protein {ECO:0000313|EMBL:ABQ24838.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
S0_scaffold_40_curated_26
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31243..31734)
DNA (492bp) protein (164aa)
YbaK/prolyl-tRNA synthetase associated region n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GE67_GEOUR
YbaK/prolyl-tRNA synthetase associated domain-containing protein
Tax=GWC2_Geobacteraceae_58_44_curated
S0_scaffold_40_curated_27
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31734..32639)
DNA (906bp) protein (302aa)
Beta-lactamase domain protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7A3_GEOUR rbh
beta-lactamase domain-containing protein rbh
Beta-lactamase domain protein {ECO:0000313|EMBL:ABQ27671.1}; Flags: Precursor;; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Displaying items 1-30 of 167 in total

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