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S0_scaffold_60_curated

Search features with annotation key words

Displaying items 1-30 of 184 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S0_scaffold_60_curated_1
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3..215
DNA (213bp) protein (71aa)
Putative uncharacterized protein id=2274794 bin=GWB2_Pelobacter_53_15 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_60_curated_2
unknown

Not on your lists

comp(349..582)
DNA (234bp) protein (78aa)

This feature has no annotations

S0_scaffold_60_curated_3
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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805..2001
DNA (1197bp) protein (399aa)
Uncharacterized protein n=2 Tax=Geobacter sulfurreducens RepID=D7AI89_GEOSK rbh
hypothetical protein rbh
Tax=GWC2_Geobacteraceae_53_11_curated
S0_scaffold_60_curated_4
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2287..4467
DNA (2181bp) protein (727aa)
Aldehyde ferredoxin oxidoreductase (EC:1.2.7.5) rbh
Tungsten-containing formaldehyde ferredoxin oxidoreductase {ECO:0000313|EMBL:GAM09735.1}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
Aldehyde ferredoxin oxidoreductase id=2850307 bin=GWC2_Syntrophobacterales_56_13 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good + rbh
S0_scaffold_60_curated_5
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

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5176..9993
DNA (4818bp) protein (1606aa)
Cytochrome c n=1 Tax=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) RepID=Q39SS9_GEOMG rbh
cytochrome c rbh
Tax=GWC2_Nitrospirae_56_14_curated
S0_scaffold_60_curated_6
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10038..19121
DNA (9084bp) protein (3028aa)
Fibronectin, type III domain protein id=1980051 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
fibronectin type III domain-containing protein
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_60_curated_7
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19701..24524
DNA (4824bp) protein (1608aa)
Cytochrome c n=1 Tax=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) RepID=Q39SS9_GEOMG
Geobacter CxxxxCH...CXXCH motif protein {ECO:0000313|EMBL:GAM09450.1}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
cytochrome c
S0_scaffold_60_curated_8
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

24694..47169
DNA (22476bp) protein (7492aa)
Fibronectin type III repeat, DUF2341 repeat and LamG-like domain protein id=1860183 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
fibronectin I domain-containing protein
Tax=GWC2_Nitrospirae_56_14_curated
S0_scaffold_60_curated_9
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47373..48323
DNA (951bp) protein (317aa)
Rhomboid family protein id=1771684 bin=GWB2_Pelobacter_53_15 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good rbh
rhomboid family protein rbh
Rhomboid family protein {ECO:0000313|EMBL:ABQ25173.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
S0_scaffold_60_curated_10
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48711..49013
DNA (303bp) protein (101aa)
Histone family protein DNA-binding protein id=1771685 bin=GWB2_Pelobacter_53_15 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
DNA-binding protein HU-beta {ECO:0000313|EMBL:GAM11674.1}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
histone family protein DNA-binding protein
S0_scaffold_60_curated_11
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49202..49771
DNA (570bp) protein (190aa)
Peptidyl-prolyl cis-trans isomerase id=1771686 bin=GWB2_Pelobacter_53_15 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good rbh
cyclophilin type peptidyl-prolyl cis-trans isomerase
Tax=GWB2_Geobacteraceae_52_12_curated
S0_scaffold_60_curated_12
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49814..50467
DNA (654bp) protein (218aa)
Putative uncharacterized protein id=1771687 bin=GWB2_Pelobacter_53_15 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good rbh
hypothetical protein rbh
Tax=GWC2_Geobacteraceae_53_11_curated
S0_scaffold_60_curated_13
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50593..51198
DNA (606bp) protein (202aa)
Amidophosphoribosyltransferase-like protein id=2245674 bin=GWB2_Geobacter-like_52_12 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
competence protein F
Competence protein F, putative {ECO:0000313|EMBL:ABL00332.1}; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
S0_scaffold_60_curated_14
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51331..51807
DNA (477bp) protein (159aa)
Transcriptional regulator, BadM/Rrf2 family id=2245673 bin=GWB2_Geobacter-like_52_12 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
BadM/Rrf2 family transcriptional regulator
Tax=GWB2_Geobacteraceae_52_12_curated
S0_scaffold_60_curated_15
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51851..52774
DNA (924bp) protein (308aa)
Cysteine synthase A n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M4N7_GEODF rbh
cysteine synthase A rbh
Cysteine synthase A {ECO:0000313|EMBL:ACM19763.1}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
S0_scaffold_60_curated_16
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52862..53356)
DNA (495bp) protein (165aa)
NADH ubiquinone oxidoreductase 20 kDa subunit id=2245671 bin=GWB2_Geobacter-like_52_12 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
hoxY; hydrogenase small subunit
Tax=GWB2_Geobacteraceae_52_12_curated
S0_scaffold_60_curated_17
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53353..54057)
DNA (705bp) protein (235aa)
Ferredoxin id=2245670 bin=GWB2_Geobacter-like_52_12 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good rbh
hoxU; bidirectional hydrogenase complex protein HoxU
Tax=GWB2_Geobacteraceae_52_12_curated
S0_scaffold_60_curated_18
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54054..55685)
DNA (1632bp) protein (544aa)
Bidirectional hydrogenase F subunit n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I6K1_CALAS rbh
hoxF; bidirectional hydrogenase subunit F rbh
Tax=GWB2_Geobacteraceae_52_12_curated
S0_scaffold_60_curated_19
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55682..56164)
DNA (483bp) protein (161aa)
bidirectional hydrogenase complex protein HoxE (EC:1.6.99.3)
NADH dehydrogenase (Ubiquinone) 24 kDa subunit id=1784904 bin=GWD2_Desulfuromonadales_54_10 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_60_curated_20
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56331..57242
DNA (912bp) protein (304aa)
Sensor diguanylate cyclase, PAS domain-containing id=1784901 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
sensor diguanylate cyclase, PAS domain-containing rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_60_curated_21
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57404..57856)
DNA (453bp) protein (151aa)
acetyltransferase (EC:2.3.1.1)
N-acetylglutamate synthase id=2198521 bin=GWB2_Pelobacter_53_15 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_60_curated_22
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57871..58356)
DNA (486bp) protein (162aa)
YbaK/ebsC protein id=1784894 bin=GWD2_Desulfuromonadales_54_10 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
membrane protein
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_60_curated_23
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58357..59370)
DNA (1014bp) protein (338aa)
Hydrogenase expression/formation protein HypE id=1784889 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
hypE; hydrogenase expression/formation protein HypE rbh
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_60_curated_24
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59532..60860
DNA (1329bp) protein (443aa)
Putative uncharacterized protein id=2198518 bin=GWB2_Pelobacter_53_15 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good rbh
hypothetical protein rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_60_curated_25
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60991..61737
DNA (747bp) protein (249aa)
Tetratricopeptide TPR_2 repeat protein id=1784881 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
hypothetical protein rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_60_curated_26
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61737..62147
DNA (411bp) protein (137aa)
Putative uncharacterized protein id=2198516 bin=GWB2_Pelobacter_53_15 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_60_curated_27
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62270..62866
DNA (597bp) protein (199aa)
Glycerol-3-phosphate acyltransferase id=1784876 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
membrane protein
Tax=GWB2_Geobacteraceae_52_12_curated
S0_scaffold_60_curated_28
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62949..63659)
DNA (711bp) protein (237aa)
Ubiquinone/menaquinone biosynthesis methyltransferase ubiE id=1784874 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
ubiquinone/menaquinone biosynthesis methyltransferase rbh
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_60_curated_29
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

63856..65271
DNA (1416bp) protein (472aa)
Putative uncharacterized protein id=1784832 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
hypothetical protein rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_60_curated_30
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65400..66446
DNA (1047bp) protein (349aa)
NLP/P60 protein id=1784830 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
NLP/P60 protein rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
Displaying items 1-30 of 184 in total

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