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S0_scaffold_130_curated

Search features with annotation key words

Displaying items 1-30 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S0_scaffold_130_curated_1
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..94)
DNA (93bp) protein (31aa)
CoB--CoM heterodisulfide reductase id=4189246 bin=GWF2_Geobacter_54_21 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_130_curated_2
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(165..752)
DNA (588bp) protein (196aa)
Heterodisulfide reductase subunit id=2081198 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
heterodisulfide reductase subunit
Tax=GWC2_Geobacteraceae_53_11_curated
S0_scaffold_130_curated_3
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1135..1449
DNA (315bp) protein (105aa)
Carboxymuconolactone decarboxylase domain protein n=1 Tax=Photobacterium sp. AK15 RepID=L8JI56_9GAMM
carboxymuconolactone decarboxylase
Tax=GWC2_Geobacteraceae_58_44_curated
S0_scaffold_130_curated_4
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1696..2550)
DNA (855bp) protein (285aa)
ABC-type tungstate transport system permease component-like protein id=3180910 bin=GWF2_Geobacter_54_21 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good rbh
tungstate ABC transporter permease component-like protein rbh
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_130_curated_5
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2563..3114)
DNA (552bp) protein (184aa)
Molybdopterin biosynthesis MoaE protein id=4668037 bin=GWC2_Geobacteraceae_55_20 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
molybdopterin biosynthesis MoaE protein
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_130_curated_6
GWF2_Planctomycetes_50_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(3426..3611)
DNA (186bp) protein (62aa)
Putative uncharacterized protein id=3790292 bin=GWF2_Planctomycetes_50_10 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
hypothetical protein
Tax=GWF2_Planctomycetes_50_10_curated
S0_scaffold_130_curated_7
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4286..5932)
DNA (1647bp) protein (549aa)
PAS/PAC sensor hybrid histidine kinase id=2192015 bin=GWB2_Geobacter-like_52_12 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good rbh
PAS/PAC sensor hybrid histidine kinase rbh
Tax=GWB2_Geobacteraceae_52_12_curated
S0_scaffold_130_curated_8
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5916..7076)
DNA (1161bp) protein (387aa)
Iron-containing alcohol dehydrogenase id=2192014 bin=GWB2_Geobacter-like_52_12 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good rbh
iron-containing alcohol dehydrogenase rbh
Tax=GWC2_Geobacteraceae_53_11_curated
S0_scaffold_130_curated_9
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7380..7553)
DNA (174bp) protein (58aa)
Uncharacterized protein {ECO:0000313|EMBL:GAM11488.1}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
id=3181074 bin=GWF2_Geobacter_54_21 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
S0_scaffold_130_curated_10
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7702..8295)
DNA (594bp) protein (198aa)
Transcriptional regulator, TetR family id=4668063 bin=GWC2_Geobacteraceae_55_20 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria rbh
TetR family transcriptional regulator rbh
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_130_curated_11
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8448..8747)
DNA (300bp) protein (100aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7G6_GEOUR
antibiotic biosynthesis monooxygenase
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:AJE03103.1}; TaxID=345632 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
S0_scaffold_130_curated_12
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8795..9625)
DNA (831bp) protein (277aa)
Putative uncharacterized protein id=3181076 bin=GWF2_Geobacter_54_21 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_130_curated_13
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9899..10429)
DNA (531bp) protein (177aa)
Putative uncharacterized protein id=3181081 bin=GWF2_Geobacter_54_21 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good rbh
hypothetical protein
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_130_curated_14
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10481..10753)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AMF3_PELPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK98523.1}; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
S0_scaffold_130_curated_15
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10786..12033)
DNA (1248bp) protein (416aa)
Putative uncharacterized protein id=3181085 bin=GWF2_Geobacter_54_21 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good rbh
hypothetical protein rbh
Tax=GWC2_Geobacteraceae_53_11_curated
S0_scaffold_130_curated_16
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12613..13779
DNA (1167bp) protein (389aa)
Iron-containing alcohol dehydrogenase id=4668076 bin=GWC2_Geobacteraceae_55_20 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria rbh
iron-containing alcohol dehydrogenase rbh
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_130_curated_17
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13779..14996
DNA (1218bp) protein (406aa)
PAS/PAC sensor signal transduction histidine kinase id=2192010 bin=GWB2_Geobacter-like_52_12 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good rbh
PAS/PAC sensor signal transduction histidine kinase rbh
Tax=GWC2_Geobacteraceae_53_11_curated
S0_scaffold_130_curated_18
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14984..16366
DNA (1383bp) protein (461aa)
Two component, sigma-54 specific, transcriptional regulator, Fis family id=3181096 bin=GWF2_Geobacter_54_21 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good rbh
Fis family transcriptional regulator
Tax=GWC2_Geobacteraceae_53_11_curated
S0_scaffold_130_curated_19
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16369..17346
DNA (978bp) protein (326aa)
Cyclic pyranopterin monophosphate synthase n=2 Tax=Geobacter sulfurreducens RepID=MOAA_GEOSL
moaA; pyranopterin triphosphate synthase
Tax=GWC2_Geobacteraceae_53_11_curated
S0_scaffold_130_curated_20
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17445..17882
DNA (438bp) protein (146aa)
Molybdopterin sulfurtransferase MOSC domain protein n=2 Tax=Geobacter metallireducens RepID=Q39TV1_GEOMG
mosC-2; molybdopterin sulfurtransferase
Tax=GWC2_Geobacteraceae_53_11_curated
S0_scaffold_130_curated_21
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18371..18547
DNA (177bp) protein (59aa)
id=3181097 bin=GWF2_Geobacter_54_21 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_130_curated_22
unknown

Not on your lists

18513..18659
DNA (147bp) protein (49aa)

This feature has no annotations

S0_scaffold_130_curated_23
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18808..19752
DNA (945bp) protein (315aa)
Radical SAM domain protein id=4646710 bin=GWC2_Geobacteraceae_55_20 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria rbh
radical SAM domain-containing protein rbh
Tax=GWC2_Geobacteraceae_53_11_curated
S0_scaffold_130_curated_24
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20188..21393
DNA (1206bp) protein (402aa)
Iron-containing alcohol dehydrogenase n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7F4_GEOUR rbh
iron-containing alcohol dehydrogenase rbh
Iron-containing alcohol dehydrogenase {ECO:0000313|EMBL:ABQ27722.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
S0_scaffold_130_curated_25
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21671..22588
DNA (918bp) protein (306aa)
ATPase rbh
ATPase associated with various cellular activities, AAA_5 id=2192007 bin=GWB2_Geobacter-like_52_12 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good rbh
ATPase associated with various cellular activities, AAA_5 {ECO:0000313|EMBL:ABQ27721.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
S0_scaffold_130_curated_26
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22576..23985
DNA (1410bp) protein (470aa)
VWA containing CoxE family protein id=2192006 bin=GWB2_Geobacter-like_52_12 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good rbh
VWA containing CoxE family protein rbh
Tax=GWB2_Geobacteraceae_52_12_curated
S0_scaffold_130_curated_27
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24023..24334
DNA (312bp) protein (104aa)
Uncharacterized protein id=3181262 bin=GWF2_Geobacter_54_21 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=GWC2_Geobacteraceae_53_11_curated
S0_scaffold_130_curated_28
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24507..25640
DNA (1134bp) protein (378aa)
Radical SAM domain protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8F1C4_9DELT rbh
hypothetical protein
Tax=RBG_16_Anaeromyxobacter_69_14_curated
S0_scaffold_130_curated_29
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25696..26805
DNA (1110bp) protein (370aa)
glycerol dehydrogenase (EC:1.1.1.6) rbh
Glycerol dehydrogenase id=3181265 bin=GWF2_Geobacter_54_21 species=Rhodospirillum photometricum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good rbh
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_130_curated_30
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26805..28814
DNA (2010bp) protein (670aa)
PAS/PAC sensor signal transduction histidine kinase id=2192005 bin=GWB2_Geobacter-like_52_12 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good rbh
PAS/PAC sensor signal transduction histidine kinase rbh
Tax=GWB2_Geobacteraceae_52_12_curated
Displaying items 1-30 of 83 in total

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