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S0_scaffold_335_curated

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Displaying items 1-30 of 39 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S0_scaffold_335_curated_1
R_Deltaproteobacteria_43_33, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..182
DNA (180bp) protein (60aa)
Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_43_33_curated
S0_scaffold_335_curated_2
Desulfobulbus propionicus, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

187..453
DNA (267bp) protein (89aa)
Transposase IS3/IS911 family protein n=1 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RFF7_DESPD
transposase IS3/IS911 family protein
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:ADW19264.1}; TaxID=577650 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source="Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3).;"
S0_scaffold_335_curated_trna_1
unknown

Not on your lists

comp(757..828)
DNA (72bp)
transferRNA Gly
S0_scaffold_335_curated_3
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(911..1705)
DNA (795bp) protein (265aa)
Fatty acid hydroxylase id=2313025 bin=GWB2_Pelobacter_53_15 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good rbh
fatty acid hydroxylase rbh
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_335_curated_4
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1709..3094)
DNA (1386bp) protein (462aa)
L-threonine synthase id=2313023 bin=GWB2_Pelobacter_53_15 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good rbh
threonine synthase rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_335_curated_5
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3197..3811)
DNA (615bp) protein (205aa)
Putative uncharacterized protein id=1956238 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
hypothetical protein rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_335_curated_6
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3894..4085
DNA (192bp) protein (64aa)
50S ribosomal protein L28 id=2313019 bin=GWB2_Pelobacter_53_15 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
50S ribosomal protein L28
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_335_curated_7
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4178..4558)
DNA (381bp) protein (127aa)
Endoribonuclease L-PSP id=1956236 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
putative endoribonuclease L-PSP
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_335_curated_8
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4555..6705)
DNA (2151bp) protein (717aa)
(P)ppGpp synthetase I, SpoT/RelA id=1956235 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
(p)ppGpp synthetase I SpoT/RelA rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_335_curated_9
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6806..7018)
DNA (213bp) protein (71aa)
DNA-directed RNA polymerase subunit omega id=1956234 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
DNA-directed RNA polymerase subunit omega
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_335_curated_10
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7148..7762)
DNA (615bp) protein (205aa)
Guanylate kinase id=1956233 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
gmk; guanylate kinase rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_335_curated_11
GWC2_Geobacteraceae_48_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8079..9407)
DNA (1329bp) protein (443aa)
Processing peptidase id=1964510 bin=GWB2_Geobacter-like_52_12 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good rbh
processing peptidase rbh
Tax=GWC2_Geobacteraceae_48_7_curated
S0_scaffold_335_curated_12
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9502..10047
DNA (546bp) protein (182aa)
dTDP-4-dehydrorhamnose 3,5-epimerase id=4151458 bin=GWC2_Geobacteraceae_55_20 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
dTDP-4-dehydrorhamnose 3,5-epimerase
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_335_curated_13
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10044..11396
DNA (1353bp) protein (451aa)
Membrane protein, major facilitator superfamily id=1837344 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
major facilitator superfamily protein rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_335_curated_14
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11536..12702
DNA (1167bp) protein (389aa)
Metal dependent phosphohydrolase id=1837346 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
metal dependent phosphohydrolase rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_335_curated_15
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12851..13528)
DNA (678bp) protein (226aa)
Spermidine synthase-like protein id=2041729 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
spermidine synthase-like protein rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_335_curated_16
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13573..14394)
DNA (822bp) protein (274aa)
Putative ribosome biogenesis GTPase RsgA id=2041725 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
ribosome small subunit-dependent GTPase A rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_335_curated_17
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14607..14807)
DNA (201bp) protein (67aa)
Cold-shock DNA-binding domain protein id=2041722 bin=GWD2_Desulfuromonadales_54_10 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
cold shock DNA/RNA-binding protein
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_335_curated_18
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14916..16223)
DNA (1308bp) protein (436aa)
Phenylacetate-CoA ligase id=2081963 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
phenylacetate--CoA ligase rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_335_curated_19
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16245..17975)
DNA (1731bp) protein (577aa)
Proline--tRNA ligase id=2081962 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
prolyl-tRNA synthetase rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_335_curated_20
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18055..19101)
DNA (1047bp) protein (349aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase id=2081961 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_335_curated_21
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19185..20039)
DNA (855bp) protein (285aa)
Bidirectional formate transporter, putative id=4216018 bin=GWF2_Geobacter_54_21 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good rbh
fdhC; bidirectional formate transporter rbh
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_335_curated_22
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20076..21368)
DNA (1293bp) protein (431aa)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1) rbh
Serine hydroxymethyltransferase id=4216016 bin=GWF2_Geobacter_54_21 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good rbh
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_335_curated_23
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21423..21869)
DNA (447bp) protein (149aa)
Ribose-5-phosphate isomerase id=2025799 bin=GWB2_Pelobacter_53_15 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
RpiB/LacA/LacB family sugar-phosphate isomerase
Tax=GWB2_Geobacteraceae_52_12_curated
S0_scaffold_335_curated_24
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21883..23115)
DNA (1233bp) protein (411aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=345632 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
3-oxoacyl-[acyl-carrier-protein] synthase 2 id=1875611 bin=GWD2_Desulfuromonadales_54_10 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
3-oxoacyl-ACP synthase
S0_scaffold_335_curated_25
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23265..23498)
DNA (234bp) protein (78aa)
acyl carrier protein
Acyl carrier protein id=1875610 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
S0_scaffold_335_curated_26
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23605..24342)
DNA (738bp) protein (246aa)
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:ABK99356.1}; EC=1.1.1.100 {ECO:0000313|EMBL:ABK99356.1};; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
3-oxoacyl-[acyl-carrier-protein] reductase id=1875609 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
3-oxoacyl-(acyl-carrier-protein) reductase rbh
S0_scaffold_335_curated_27
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24376..25299)
DNA (924bp) protein (308aa)
Malonyl CoA-acyl carrier protein transacylase id=1875607 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
fabD-2; malonyl-CoA--acyl carrier protein transacylase rbh
Tax=GWB2_Geobacteraceae_52_12_curated
S0_scaffold_335_curated_28
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25343..26326)
DNA (984bp) protein (328aa)
3-oxoacyl-ACP synthase (EC:2.3.1.41) rbh
3-oxoacyl-[acyl-carrier-protein] synthase 3 id=1875605 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_335_curated_29
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26484..27539)
DNA (1056bp) protein (352aa)
Phosphate acyltransferase id=1875603 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
putative glycerol-3-phosphate acyltransferase PlsX rbh
Tax=GWB2_Geobacteraceae_52_12_curated
Displaying items 1-30 of 39 in total

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