ggKbase home page

S0_scaffold_256_curated

Search features with annotation key words

Displaying items 1-30 of 49 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S0_scaffold_256_curated_1
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(138..779)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EJ23_GEOBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACH39978.1}; TaxID=404380 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622).;"
S0_scaffold_256_curated_2
unknown

Not on your lists

comp(1533..1646)
DNA (114bp) protein (38aa)

This feature has no annotations

S0_scaffold_256_curated_3
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1812..2399
DNA (588bp) protein (196aa)
Transcriptional regulator n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G6U2_GEOUR rbh
TetR family transcriptional regulator rbh
Transcriptional regulator {ECO:0000313|EMBL:ABQ27510.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
S0_scaffold_256_curated_4
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2446..3969
DNA (1524bp) protein (508aa)
mercuric reductase
Pyridine nucleotide-disulphide oxidoreductase dimerisation region id=1973664 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
Tax=BJP_IG2157_Desulfuromonadales_56_134
S0_scaffold_256_curated_5
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4028..4711
DNA (684bp) protein (228aa)
SNARE associated Golgi protein-related protein id=2166905 bin=GWB2_Geobacter-like_52_12 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good rbh
dihydrolipoamide dehydrogenase
Tax=GWB2_Geobacteraceae_52_12_curated
S0_scaffold_256_curated_6
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4731..5690
DNA (960bp) protein (320aa)
Radical SAM domain protein id=2166908 bin=GWB2_Geobacter-like_52_12 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good rbh
radical SAM protein
Tax=GWC2_Geobacteraceae_53_11_curated
S0_scaffold_256_curated_trna_2
unknown

Not on your lists

comp(6030..6102)
DNA (73bp)
transferRNA Phe
S0_scaffold_256_curated_7
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6163..7272)
DNA (1110bp) protein (370aa)
Radical SAM domain iron-sulfur cluster-binding oxidoreductase id=1778937 bin=GWD2_Desulfuromonadales_54_10 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
radical SAM protein
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_256_curated_8
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7463..7954
DNA (492bp) protein (164aa)
Roadblock/LC7 family protein id=1778939 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
roadblock/LC7 family protein
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_256_curated_9
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7975..8562
DNA (588bp) protein (196aa)
GTPase-like protein id=1778942 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
MglA protein rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_256_curated_10
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8646..8978
DNA (333bp) protein (111aa)
Uncharacterized protein id=1778945 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_256_curated_trna_1
unknown

Not on your lists

9086..9175
DNA (90bp)
transferRNA Ser
S0_scaffold_256_curated_11
unknown

Not on your lists

comp(9431..9676)
DNA (246bp) protein (82aa)

This feature has no annotations

S0_scaffold_256_curated_12
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9728..10228)
DNA (501bp) protein (167aa)
Ribonuclease H id=1778951 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
ribonuclease H
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_256_curated_13
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10212..10865)
DNA (654bp) protein (218aa)
Phospholipid/glycerol acyltransferase id=1778954 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
phospholipid/glycerol acyltransferase rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_256_curated_14
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11076..11615
DNA (540bp) protein (180aa)
NUDIX hydrolase id=1778957 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
NUDIX hydrolase
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_256_curated_15
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11608..11961
DNA (354bp) protein (118aa)
Class I peptide chain release factor id=1896577 bin=GWB2_Pelobacter_53_15 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
class I peptide chain release factor
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_256_curated_16
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11958..14327
DNA (2370bp) protein (790aa)
MutS2 protein id=1896574 bin=GWB2_Pelobacter_53_15 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good rbh
MutS2 family protein rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_256_curated_17
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14710..15684
DNA (975bp) protein (325aa)
Cytochrome c, 8 heme-binding sites id=1896570 bin=GWB2_Pelobacter_53_15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good rbh
omcZ; cytochrome c, 8 heme-binding sites
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_256_curated_18
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15937..16239
DNA (303bp) protein (101aa)
HNH endonuclease id=1896567 bin=GWB2_Pelobacter_53_15 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
HNH endonuclease
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_256_curated_19
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16244..16879
DNA (636bp) protein (212aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 id=1778973 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
HAD family hydrolase rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_256_curated_20
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17060..17626)
DNA (567bp) protein (189aa)
Isochorismatase hydrolase id=1896552 bin=GWB2_Pelobacter_53_15 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good rbh
isochorismatase hydrolase
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_256_curated_21
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17668..19110)
DNA (1443bp) protein (481aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=1896482 bin=GWB2_Pelobacter_53_15 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good rbh
two component sigma54 specific Fis family transcriptional regulator rbh
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_256_curated_22
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19180..20298)
DNA (1119bp) protein (373aa)
Signal transduction histidine kinase, nitrogen specific, NtrB id=1896478 bin=GWB2_Pelobacter_53_15 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good rbh
signal transduction histidine kinase NtrB rbh
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_256_curated_23
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20276..21304)
DNA (1029bp) protein (343aa)
tRNA-dihydrouridine synthase id=1896474 bin=GWB2_Pelobacter_53_15 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good rbh
nifR3 family TIM-barrel protein rbh
Tax=GWC2_Geobacteraceae_53_11_curated
S0_scaffold_256_curated_24
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21469..21756
DNA (288bp) protein (96aa)
Sec-independent protein translocase protein TatA id=1896471 bin=GWB2_Pelobacter_53_15 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
twin-arginine translocation protein, TatA/E family subunit
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_256_curated_25
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21869..22429)
DNA (561bp) protein (187aa)
Carbonic anhydrase, beta-family, clade D n=2 Tax=Geobacter metallireducens RepID=Q39XK8_GEOMG
carbonic anhydrase
Carbonic anhydrase, beta-family, clade D {ECO:0000313|EMBL:ABB31016.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
S0_scaffold_256_curated_26
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22745..23308)
DNA (564bp) protein (188aa)
Transcriptional regulator, XRE family id=2283606 bin=GWB2_Geobacter-like_52_12 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good rbh
XRE family transcriptional regulator rbh
Tax=GWB2_Geobacteraceae_52_12_curated
S0_scaffold_256_curated_27
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23663..25225)
DNA (1563bp) protein (521aa)
acetyl-CoA hydrolase (EC:3.1.2.1) rbh
Acetyl-CoA hydrolase n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M0U1_GEODF rbh
Succinyl:acetate coenzyme A transferase {ECO:0000313|EMBL:ACM20944.1}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
S0_scaffold_256_curated_28
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25467..26030
DNA (564bp) protein (188aa)
Transcriptional regulator, TetR family id=2211473 bin=GWB2_Geobacter-like_52_12 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
TetR family transcriptional regulator
Tax=GWB2_Geobacteraceae_52_12_curated
Displaying items 1-30 of 49 in total

View Taxonomy