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S1_scaffold_77_curated

Search features with annotation key words

Displaying items 1-30 of 112 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S1_scaffold_77_curated_1
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

421..1170
DNA (750bp) protein (250aa)
Uncharacterized protein {ECO:0000313|EMBL:AKF50357.1}; TaxID=1324932 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae.;" source="Pseudomonas syringae pv. syringae HS191.;"
S1_scaffold_77_curated_2
Serratia liquefaciens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1154..1936
DNA (783bp) protein (261aa)
Uncharacterized protein {ECO:0000313|EMBL:GAK29406.1}; TaxID=1460083 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia liquefaciens FK01.;"
S1_scaffold_77_curated_3
Serratia liquefaciens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1936..2718
DNA (783bp) protein (261aa)
Uncharacterized protein {ECO:0000313|EMBL:GAK29407.1}; TaxID=1460083 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia liquefaciens FK01.;"
S1_scaffold_77_curated_4
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2715..3626)
DNA (912bp) protein (304aa)
Transcriptional regulator, LysR family n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VNR0_POLNA rbh
LysR family transcriptional regulator rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_77_curated_5
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3763..4503
DNA (741bp) protein (247aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 id=1311492 bin=GWE1_Burkholderiales_65_30 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
HAD family hydrolase rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_77_curated_6
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4561..5259
DNA (699bp) protein (233aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1) rbh
ribulose-phosphate 3-epimerase n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002F742F1 rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_77_curated_7
CG_Rhodof_01, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5286..6389
DNA (1104bp) protein (368aa)
Fructose-1,6-bisphosphatase class 1 1 n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=F16A1_RHOFD rbh
inositol phosphatase/fructose-1,6-bisphosphatase rbh
Tax=CG_Rhodof_01
S1_scaffold_77_curated_8
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6523..7398
DNA (876bp) protein (292aa)
phosphoribulokinase (EC:2.7.1.19) rbh
Phosphoribulokinase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21YM8_RHOFD rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_77_curated_9
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7543..9624
DNA (2082bp) protein (694aa)
Transketolase id=1311488 bin=GWE1_Burkholderiales_65_30 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
transketolase rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_77_curated_10
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9637..10314
DNA (678bp) protein (226aa)
Phosphoglycolate phosphatase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VNR6_POLNA
phosphoglycolate phosphatase
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_77_curated_11

Not on your lists

10379..11389
DNA (1011bp) protein (337aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DI10_9BACT rbh
gapA; glyceraldehyde 3-phosphate dehydrogenase rbh
S1_scaffold_77_curated_12
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11392..12585
DNA (1194bp) protein (398aa)
Phosphoglycerate kinase n=1 Tax=Candidatus Symbiobacter mobilis CR RepID=U5N9Z0_9BURK rbh
pgk; phosphoglycerate kinase rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_77_curated_13
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12767..13804
DNA (1038bp) protein (346aa)
cbbA2; fructose-1,6-bisphosphate aldolase (EC:4.1.2.13) rbh
fructose-bisphosphate aldolase n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI00030F159C rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_77_curated_14
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13896..14591)
DNA (696bp) protein (232aa)
TetR family transcriptional regulator n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI0003720CC5
bacterial regulatory s, tetR family protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_77_curated_15
RIFOXYC2_FULL_Burkholderiales_59_8_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14720..15031
DNA (312bp) protein (104aa)
Putative uncharacterized protein n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13J81_BURXL
hypothetical protein
Tax=RIFOXYC2_FULL_Burkholderiales_59_8_curated
S1_scaffold_77_curated_16
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15263..16591
DNA (1329bp) protein (443aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI000371C061 rbh
bacterial extracellular solute-binding family protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_77_curated_17
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16657..17574
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI00036F6CBE rbh
binding--dependent transport system inner membrane component family protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_77_curated_18
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17607..18515
DNA (909bp) protein (303aa)
Carbohydrate ABC transporter membrane protein 2, CUT1 family n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13J89_BURXL rbh
binding--dependent transport system inner membrane component family protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_77_curated_19
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18528..19625
DNA (1098bp) protein (366aa)
Carbohydrate ABC transporter ATP-binding protein, CUT1 family n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13J88_BURXL rbh
ABC transporter family protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_77_curated_20
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19635..20501
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI00036E683B
FAD binding domain in molybdopterin dehydrogenase family protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
S1_scaffold_77_curated_21
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20507..21010
DNA (504bp) protein (168aa)
(2Fe-2S)-binding protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI000372A199
[2Fe-2S] binding domain protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_77_curated_22
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20997..23369
DNA (2373bp) protein (791aa)
xanthine dehydrogenase n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI00035FACEA rbh
molybdopterin-binding domain of aldehyde dehydrogenase family protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_77_curated_23
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23373..24251
DNA (879bp) protein (293aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI00037D9414 rbh
NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase family protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
S1_scaffold_77_curated_24
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24255..24893
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000374711F
putative Carbon monoxide dehydrogenase, coxG accessory protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_77_curated_25
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24925..26301
DNA (1377bp) protein (459aa)
L-serine dehydratase 1 (EC:4.3.1.17) rbh
L-serine ammonia-lyase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21ZH8_RHOFD rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_77_curated_26
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26314..27507
DNA (1194bp) protein (398aa)
Amidohydrolase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T8M8_ACIDE rbh
hippurate hydrolase rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_77_curated_27
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27684..28823
DNA (1140bp) protein (380aa)
Extracellular ligand-binding receptor n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RQ13_ACCPU rbh
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein {ECO:0000313|EMBL:KFB70619.1}; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
Extracellular ligand-binding receptor rbh
S1_scaffold_77_curated_28
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28854..32372
DNA (3519bp) protein (1173aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21ZN9_RHOFD
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Tax=CG_Rhodof_04
S1_scaffold_77_curated_29
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32387..33166)
DNA (780bp) protein (260aa)
hypothetical protein id=5080150 bin=GWF1_Burkholderiales_GWF1_66_17 species=Variovorax paradoxus genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
NYN domain-containing protein
Tax=GWE1_Burkholderiales_65_30_curated
S1_scaffold_77_curated_30
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33362..34393
DNA (1032bp) protein (344aa)
Extracellular protease n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9Q2B9_9DELT rbh
Peptidase M35 {ECO:0000313|EMBL:KFA91474.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
extracellular protease
Displaying items 1-30 of 112 in total

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