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S1_scaffold_585_curated

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Displaying 28 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S1_scaffold_585_curated_1
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..394
DNA (393bp) protein (131aa)
Citrate utilization protein B n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21SQ8_RHOFD
citrate utilization protein B
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_585_curated_trna_3
unknown

Not on your lists

comp(695..767)
DNA (73bp)
transferRNA Gly
S1_scaffold_585_curated_2
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1044..2360
DNA (1317bp) protein (439aa)
Integrase family protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TU51_ALIDB rbh
Preprotein translocase {ECO:0000313|EMBL:KJA09900.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
integrase family protein rbh
S1_scaffold_585_curated_3
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2396..2674
DNA (279bp) protein (93aa)
Uncharacterized protein n=3 Tax=Azotobacter vinelandii RepID=M9YDA2_AZOVI
hypothetical protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_585_curated_4
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2655..2972
DNA (318bp) protein (106aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2DYF6_9BACT
hypothetical protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_585_curated_5
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3083..3691
DNA (609bp) protein (203aa)
Uncharacterized protein {ECO:0000313|EMBL:KDB51326.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
S1_scaffold_585_curated_6
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3792..4004
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TVS9_ALIDB
Uncharacterized protein {ECO:0000313|EMBL:GAO22713.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
S1_scaffold_585_curated_7
unknown

Not on your lists

4001..4111
DNA (111bp) protein (37aa)

This feature has no annotations

S1_scaffold_585_curated_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4108..4488
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0IB84_9BURK
Uncharacterized protein {ECO:0000313|EMBL:GAO21240.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
S1_scaffold_585_curated_9
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4482..6458
DNA (1977bp) protein (659aa)
Primase 2 n=1 Tax=Acidovorax sp. NO-1 RepID=H0C2Y8_9BURK rbh
hypothetical protein rbh
Tax=CG_Rhodof_04
S1_scaffold_585_curated_10
unknown

Not on your lists

6446..6571
DNA (126bp) protein (42aa)

This feature has no annotations

S1_scaffold_585_curated_11
unknown

Not on your lists

6568..6783
DNA (216bp) protein (72aa)

This feature has no annotations

S1_scaffold_585_curated_12
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6780..7079
DNA (300bp) protein (100aa)
UPI0003D3F997 related cluster n=1 Tax=unknown RepID=UPI0003D3F997
Uncharacterized protein {ECO:0000313|EMBL:GAD24046.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
S1_scaffold_585_curated_trna_2
unknown

Not on your lists

comp(7274..7346)
DNA (73bp)
transferRNA Phe
S1_scaffold_585_curated_13
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7402..8073)
DNA (672bp) protein (224aa)
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YER0_9BURK rbh
response regulator receiver domain-containing protein rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_585_curated_14
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8115..10397)
DNA (2283bp) protein (761aa)
Multi-sensor signal transduction histidine kinase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21SG1_RHOFD rbh
multi-sensor signal transduction histidine kinase rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_585_curated_15
RIFOXYC2_FULL_Burkholderiales_59_8_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10394..11026)
DNA (633bp) protein (211aa)
Putative proline rich signal peptide protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21SG0_RHOFD
hypothetical protein
Tax=RIFOXYC2_FULL_Burkholderiales_59_8_curated
S1_scaffold_585_curated_16
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10986..12302)
DNA (1317bp) protein (439aa)
Sun protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21SF9_RHOFD rbh
sun protein rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_585_curated_17
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12374..16594)
DNA (4221bp) protein (1407aa)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6) rbh
DNA-directed RNA polymerase subunit beta' n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=RPOC_RHOFD rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_585_curated_18
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16672..20784)
DNA (4113bp) protein (1371aa)
rpoB; DNA-directed RNA polymerase, subunit beta RpoB (EC:2.7.7.6) rbh
DNA-directed RNA polymerase subunit beta n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=RPOB_RHOFD rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_585_curated_19
RIFOXYC2_FULL_Burkholderiales_59_8_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(21024..21398)
DNA (375bp) protein (125aa)
ribosomal protein l7/l12; K02935 large subunit ribosomal protein L7/L12 id=5083766 bin=GWF1_Burkholderiales_GWF1_66_17 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
rplL; 50S ribosomal protein L7/L12
Tax=RIFOXYC2_FULL_Burkholderiales_59_8_curated
S1_scaffold_585_curated_20
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(21441..21962)
DNA (522bp) protein (174aa)
50S ribosomal protein L10 n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YER8_9BURK
rplJ; 50S ribosomal protein L10
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_585_curated_21
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(22218..22913)
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YES0_9BURK rbh
rplA; 50S ribosomal protein L1 rbh
Tax=CG_Rhodof_02
S1_scaffold_585_curated_22
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(22914..23345)
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=RL11_RHOFD
50S ribosomal protein L11
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_585_curated_23
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23579..24187)
DNA (609bp) protein (203aa)
Transcription termination/antitermination protein NusG n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21SF2_RHOFD rbh
NusG antitermination factor rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_585_curated_24
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24187..24570)
DNA (384bp) protein (128aa)
Protein translocase subunit secE/sec61 gamma n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21SF1_RHOFD
secE; preprotein translocase subunit SecE
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_585_curated_trna_1
unknown

Not on your lists

comp(24684..24756)
DNA (73bp)
transferRNA Trp
S1_scaffold_585_curated_25
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24787..24879)
DNA (93bp) protein (31aa)
elongation factor Tu n=1 Tax=Methylotenera sp. 1P/1 RepID=UPI000380D12C
Tax=CG_Rhodof_04
Displaying 28 items

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