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S1_scaffold_218_curated

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Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S1_scaffold_218_curated_1
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1007
DNA (1005bp) protein (335aa)
Candidate periplasmic component n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y120_RAMTT rbh
dctP; periplasmic protein rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
S1_scaffold_218_curated_2
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1066..2259
DNA (1194bp) protein (398aa)
dehydratase n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0002DBCBF0 rbh
2-oxo-3-deoxygalactonate 6-phosphate aldolase rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
S1_scaffold_218_curated_3
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2299..2811
DNA (513bp) protein (171aa)
gluconate kinase (EC:2.7.1.12)
Gluconate kinase, SKI family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q126V9_POLSJ
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
S1_scaffold_218_curated_4
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2794..4158)
DNA (1365bp) protein (455aa)
Mannitol dehydrogenase-like protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q125C8_POLSJ rbh
mannitol dehydrogenase-like protein rbh
Mannitol dehydrogenase-like protein {ECO:0000313|EMBL:ABE45864.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
S1_scaffold_218_curated_5
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4205..5269)
DNA (1065bp) protein (355aa)
Malate/L-lactate dehydrogenase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q125D0_POLSJ rbh
hypothetical protein rbh
Malate/L-lactate dehydrogenase {ECO:0000313|EMBL:ABE45862.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
S1_scaffold_218_curated_6
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5275..6801)
DNA (1527bp) protein (509aa)
altronate dehydratase (EC:4.2.1.7) rbh
Altronate dehydratase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q125D1_POLSJ rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
S1_scaffold_218_curated_7
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6806..8200)
DNA (1395bp) protein (465aa)
Candidate large permease component n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XYZ6_RAMTT rbh
dctQ; large permease rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
S1_scaffold_218_curated_8
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8213..8779)
DNA (567bp) protein (189aa)
Tripartite ATP-independent periplasmic transporter DctQ n=1 Tax=uncultured bacterium RepID=K2DNA9_9BACT rbh
tripartite ATP-independent periplasmic transporter DctQ
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
S1_scaffold_218_curated_9
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8792..9790)
DNA (999bp) protein (333aa)
TRAP dicarboxylate transporter, subunit DctP n=1 Tax=Variovorax paradoxus B4 RepID=T1X4X2_VARPD rbh
TRAP dicarboxylate transporter, subunit DctP rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
S1_scaffold_218_curated_10
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9828..10544)
DNA (717bp) protein (239aa)
Transcriptional regulator, GntR family-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XYZ9_RAMTT rbh
GntR family transcriptional regulator rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
S1_scaffold_218_curated_11
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10734..11513)
DNA (780bp) protein (260aa)
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Halomonas sp. HAL1 RepID=G4FAX2_9GAMM
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
S1_scaffold_218_curated_12
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11563..12576)
DNA (1014bp) protein (338aa)
pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262) rbh
hypothetical protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI000375749B rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
S1_scaffold_218_curated_13
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12573..13688)
DNA (1116bp) protein (372aa)
hypothetical protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI000363E6B9
type III effector Hrp-dependent protein
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
S1_scaffold_218_curated_14
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13688..14755)
DNA (1068bp) protein (356aa)
L-lactate dehydrogenase (EC:1.1.1.27)
Malate/L-lactate dehydrogenase n=1 Tax=Burkholderia sp. SJ98 RepID=K8RE47_9BURK rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
S1_scaffold_218_curated_15
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14921..15676)
DNA (756bp) protein (252aa)
Putative oxidoreductase, SDR family n=1 Tax=Variovorax paradoxus B4 RepID=T1X8V2_VARPD rbh
putative oxidoreductase, SDR family rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
S1_scaffold_218_curated_16
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15669..17177)
DNA (1509bp) protein (503aa)
C4-dicarboxylate ABC transporter permease n=1 Tax=Herbaspirillum lusitanum RepID=UPI0002DCCCEB rbh
hypothetical protein rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
S1_scaffold_218_curated_17
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17193..17666)
DNA (474bp) protein (158aa)
Tripartite tricarboxylate transporter TctB family n=1 Tax=Herbaspirillum sp. YR522 RepID=J3CNW9_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
S1_scaffold_218_curated_18
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17814..18782)
DNA (969bp) protein (323aa)
twin-arginine translocation pathway signal protein n=1 Tax=Herbaspirillum lusitanum RepID=UPI0003659F86 rbh
hypothetical protein rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
S1_scaffold_218_curated_19
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18935..19669
DNA (735bp) protein (245aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q125D7_POLSJ rbh
short-chain dehydrogenase/reductase SDR rbh
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
S1_scaffold_218_curated_20
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19727..20575
DNA (849bp) protein (283aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10) rbh
5-carboxymethyl-2-hydroxymuconate delta-isomerase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q125D9_POLSJ rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
S1_scaffold_218_curated_21
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21004..21768)
DNA (765bp) protein (255aa)
NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21TB3_RHOFD rbh
NADH ubiquinone oxidoreductase, 20 kDa subunit rbh
NADH ubiquinone oxidoreductase, 20 kDa subunit {ECO:0000313|EMBL:ABD70990.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
S1_scaffold_218_curated_22
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21784..23280)
DNA (1497bp) protein (499aa)
NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21TB4_RHOFD rbh
NADH-ubiquinone oxidoreductase subunit 49kDa rbh
NADH-ubiquinone oxidoreductase, chain 49kDa {ECO:0000313|EMBL:ABD70989.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
S1_scaffold_218_curated_23
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23283..24725)
DNA (1443bp) protein (481aa)
NADH/Ubiquinone/plastoquinone (Complex I) n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21TB5_RHOFD rbh
NADH/ubiquinone/plastoquinone (complex I) rbh
NADH/Ubiquinone/plastoquinone (Complex I) {ECO:0000313|EMBL:ABD70988.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
S1_scaffold_218_curated_24
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24722..25333)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21TB6_RHOFD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD70987.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
S1_scaffold_218_curated_25
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25330..26253)
DNA (924bp) protein (308aa)
NAD-dependent dehydrogenase subunit n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21TB7_RHOFD rbh
NAD-dependent dehydrogenase subunit rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
S1_scaffold_218_curated_26
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26250..28256)
DNA (2007bp) protein (669aa)
NADH dehydrogenase (Quinone) {ECO:0000313|EMBL:ABD70985.1}; EC=1.6.99.5 {ECO:0000313|EMBL:ABD70985.1};; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
NADH dehydrogenase (quinone) (EC:1.6.99.5) rbh
NADH dehydrogenase (Quinone) n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21TB8_RHOFD rbh
S1_scaffold_218_curated_27
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(28486..30582)
DNA (2097bp) protein (699aa)
methionyl-tRNA synthetase (EC:6.1.1.10) rbh
Methionine--tRNA ligase n=1 Tax=Polaromonas sp. CF318 RepID=J2KWF2_9BURK rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_218_curated_28
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30617..31924)
DNA (1308bp) protein (436aa)
Patatin protein n=1 Tax=uncultured organism RepID=D8VMM7_9ZZZZ rbh
patatin rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_218_curated_29
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32049..33140
DNA (1092bp) protein (364aa)
Putative iron sulfur binding protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21TC2_RHOFD rbh
putative iron sulfur-binding protein rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_218_curated_30
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33158..33856)
DNA (699bp) protein (233aa)
peptide methionine sulfoxide reductase (EC:1.8.4.11)
hypothetical protein n=1 Tax=Methyloversatilis universalis RepID=UPI00035EB190
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
Displaying items 1-30 of 54 in total

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