name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
S1_scaffold_218_curated_1
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3..1007
|
Candidate periplasmic component n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y120_RAMTT
rbh
dctP; periplasmic protein
rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
|
|
S1_scaffold_218_curated_2
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1066..2259
|
dehydratase n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0002DBCBF0
rbh
2-oxo-3-deoxygalactonate 6-phosphate aldolase
rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
|
|
S1_scaffold_218_curated_3
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2299..2811
|
gluconate kinase (EC:2.7.1.12)
Gluconate kinase, SKI family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q126V9_POLSJ
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
|
|
S1_scaffold_218_curated_4
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2794..4158)
|
Mannitol dehydrogenase-like protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q125C8_POLSJ
rbh
mannitol dehydrogenase-like protein
rbh
Mannitol dehydrogenase-like protein {ECO:0000313|EMBL:ABE45864.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
|
|
S1_scaffold_218_curated_5
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4205..5269)
|
Malate/L-lactate dehydrogenase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q125D0_POLSJ
rbh
hypothetical protein
rbh
Malate/L-lactate dehydrogenase {ECO:0000313|EMBL:ABE45862.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
|
|
S1_scaffold_218_curated_6
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5275..6801)
|
altronate dehydratase (EC:4.2.1.7)
rbh
Altronate dehydratase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q125D1_POLSJ
rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
|
|
S1_scaffold_218_curated_7
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6806..8200)
|
Candidate large permease component n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XYZ6_RAMTT
rbh
dctQ; large permease
rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
|
|
S1_scaffold_218_curated_8
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8213..8779)
|
Tripartite ATP-independent periplasmic transporter DctQ n=1 Tax=uncultured bacterium RepID=K2DNA9_9BACT
rbh
tripartite ATP-independent periplasmic transporter DctQ
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
|
|
S1_scaffold_218_curated_9
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8792..9790)
|
TRAP dicarboxylate transporter, subunit DctP n=1 Tax=Variovorax paradoxus B4 RepID=T1X4X2_VARPD
rbh
TRAP dicarboxylate transporter, subunit DctP
rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
|
|
S1_scaffold_218_curated_10
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9828..10544)
|
Transcriptional regulator, GntR family-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XYZ9_RAMTT
rbh
GntR family transcriptional regulator
rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
|
|
S1_scaffold_218_curated_11
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10734..11513)
|
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Halomonas sp. HAL1 RepID=G4FAX2_9GAMM
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
|
|
S1_scaffold_218_curated_12
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11563..12576)
|
pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
rbh
hypothetical protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI000375749B
rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
|
|
S1_scaffold_218_curated_13
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12573..13688)
|
hypothetical protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI000363E6B9
type III effector Hrp-dependent protein
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
|
|
S1_scaffold_218_curated_14
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13688..14755)
|
L-lactate dehydrogenase (EC:1.1.1.27)
Malate/L-lactate dehydrogenase n=1 Tax=Burkholderia sp. SJ98 RepID=K8RE47_9BURK
rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
|
|
S1_scaffold_218_curated_15
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14921..15676)
|
Putative oxidoreductase, SDR family n=1 Tax=Variovorax paradoxus B4 RepID=T1X8V2_VARPD
rbh
putative oxidoreductase, SDR family
rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
|
|
S1_scaffold_218_curated_16
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15669..17177)
|
C4-dicarboxylate ABC transporter permease n=1 Tax=Herbaspirillum lusitanum RepID=UPI0002DCCCEB
rbh
hypothetical protein
rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
|
|
S1_scaffold_218_curated_17
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17193..17666)
|
Tripartite tricarboxylate transporter TctB family n=1 Tax=Herbaspirillum sp. YR522 RepID=J3CNW9_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
|
|
S1_scaffold_218_curated_18
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17814..18782)
|
twin-arginine translocation pathway signal protein n=1 Tax=Herbaspirillum lusitanum RepID=UPI0003659F86
rbh
hypothetical protein
rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
|
|
S1_scaffold_218_curated_19
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18935..19669
|
Short-chain dehydrogenase/reductase SDR n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q125D7_POLSJ
rbh
short-chain dehydrogenase/reductase SDR
rbh
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
|
|
S1_scaffold_218_curated_20
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19727..20575
|
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10)
rbh
5-carboxymethyl-2-hydroxymuconate delta-isomerase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q125D9_POLSJ
rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
|
|
S1_scaffold_218_curated_21
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21004..21768)
|
NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21TB3_RHOFD
rbh
NADH ubiquinone oxidoreductase, 20 kDa subunit
rbh
NADH ubiquinone oxidoreductase, 20 kDa subunit {ECO:0000313|EMBL:ABD70990.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
|
|
S1_scaffold_218_curated_22
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21784..23280)
|
NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21TB4_RHOFD
rbh
NADH-ubiquinone oxidoreductase subunit 49kDa
rbh
NADH-ubiquinone oxidoreductase, chain 49kDa {ECO:0000313|EMBL:ABD70989.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
|
|
S1_scaffold_218_curated_23
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23283..24725)
|
NADH/Ubiquinone/plastoquinone (Complex I) n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21TB5_RHOFD
rbh
NADH/ubiquinone/plastoquinone (complex I)
rbh
NADH/Ubiquinone/plastoquinone (Complex I) {ECO:0000313|EMBL:ABD70988.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
|
|
S1_scaffold_218_curated_24
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24722..25333)
|
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21TB6_RHOFD
rbh
hypothetical protein
rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD70987.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
|
|
S1_scaffold_218_curated_25
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(25330..26253)
|
NAD-dependent dehydrogenase subunit n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21TB7_RHOFD
rbh
NAD-dependent dehydrogenase subunit
rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
|
|
S1_scaffold_218_curated_26
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26250..28256)
|
NADH dehydrogenase (Quinone) {ECO:0000313|EMBL:ABD70985.1}; EC=1.6.99.5 {ECO:0000313|EMBL:ABD70985.1};; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
NADH dehydrogenase (quinone) (EC:1.6.99.5)
rbh
NADH dehydrogenase (Quinone) n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21TB8_RHOFD
rbh
|
|
S1_scaffold_218_curated_27
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(28486..30582)
|
methionyl-tRNA synthetase (EC:6.1.1.10)
rbh
Methionine--tRNA ligase n=1 Tax=Polaromonas sp. CF318 RepID=J2KWF2_9BURK
rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
|
|
S1_scaffold_218_curated_28
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(30617..31924)
|
Patatin protein n=1 Tax=uncultured organism RepID=D8VMM7_9ZZZZ
rbh
patatin
rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
|
|
S1_scaffold_218_curated_29
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
32049..33140
|
Putative iron sulfur binding protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21TC2_RHOFD
rbh
putative iron sulfur-binding protein
rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
|
|
S1_scaffold_218_curated_30
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(33158..33856)
|
peptide methionine sulfoxide reductase (EC:1.8.4.11)
hypothetical protein n=1 Tax=Methyloversatilis universalis RepID=UPI00035EB190
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
|