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S10_scaffold_420_curated

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Displaying items 1-30 of 46 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S10_scaffold_420_curated_1
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..999)
DNA (999bp) protein (333aa)
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.1.1.61); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] id=7721650 bin=CNBR_ACT species=Leifsonia xyli genus=Leifsonia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.1.1.61) rbh
S10_scaffold_420_curated_2
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1062..2714)
DNA (1653bp) protein (551aa)
hypothetical protein n=1 Tax=Agromyces subbeticus RepID=UPI0003B621DA
Uncharacterized protein {ECO:0000313|EMBL:EAR25771.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
hypothetical protein
S10_scaffold_420_curated_3
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2846..3976)
DNA (1131bp) protein (377aa)
nifS; cysteine desulfurase; K04487 cysteine desulfurase [EC:2.8.1.7] id=7721647 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
Cysteine desulfurase {ECO:0000313|EMBL:EPR76854.1}; EC=2.8.1.7 {ECO:0000313|EMBL:EPR76854.1};; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
cysteine desulfurase rbh
S10_scaffold_420_curated_4
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3997..6090
DNA (2094bp) protein (698aa)
type II secretory pathway, pullulanase PulA; K02438 glycogen operon protein GlgX [EC:3.2.1.-] id=7721646 bin=CNBR_ACT species=Microbacterium laevaniformans genus=Microbacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
type II secretory pathway, pullulanase PulA rbh
S10_scaffold_420_curated_5
unknown

Not on your lists

6429..6647
DNA (219bp) protein (73aa)

This feature has no annotations

S10_scaffold_420_curated_6
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6638..7372
DNA (735bp) protein (245aa)
hypothetical protein id=7719501 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:EPD83538.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hypothetical protein
S10_scaffold_420_curated_7
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7416..7889
DNA (474bp) protein (158aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
Putative transcriptional regulator id=7721645 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
ybaK/ebsC protein
S10_scaffold_420_curated_8
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7983..10535)
DNA (2553bp) protein (851aa)
glgP; putative glucan phosphorylase (EC:2.4.1.1); K00688 starch phosphorylase [EC:2.4.1.1] id=7721631 bin=CNBR_ACT species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
glgP; putative glucan phosphorylase (EC:2.4.1.1) rbh
S10_scaffold_420_curated_9
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10631..12652
DNA (2022bp) protein (674aa)
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase {ECO:0000256|HAMAP-Rule:MF_02124}; Short=GMPMT {ECO:0000256|HAMAP-Rule:MF_02124};; EC=2.4.99.16 {ECO:0000256|HAMAP-Rule:MF_02124};; (1->4)-alpha-D-glucan:maltose-1-phosphate alpha-D-maltosyltransferase {ECO:0000256|HAMAP-Rule:MF_02124}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
alpha-amylase id=7721630 bin=CNBR_ACT species=Leifsonia xyli genus=Leifsonia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
alpha-amylase rbh
S10_scaffold_420_curated_10
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12656..14839
DNA (2184bp) protein (728aa)
glgB; glycogen branching protein (EC:2.4.1.18); K00700 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] id=7721629 bin=CNBR_ACT species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
glgB; glycogen branching protein (EC:2.4.1.18) rbh
S10_scaffold_420_curated_11
unknown

Not on your lists

comp(14836..15207)
DNA (372bp) protein (124aa)
id=7721622 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACT organism_group=Actinobacteria
S10_scaffold_420_curated_12
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15211..16107)
DNA (897bp) protein (299aa)
Thioredoxin id=7721621 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
Thioredoxin {ECO:0000313|EMBL:EAR25614.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
thioredoxin rbh
S10_scaffold_420_curated_13
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16104..17831)
DNA (1728bp) protein (576aa)
hypothetical protein id=7721620 bin=CNBR_ACT species=Salinibacterium sp. PAMC 21357 genus=Salinibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
Uncharacterized protein {ECO:0000313|EMBL:EPR76851.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
hypothetical protein
S10_scaffold_420_curated_14
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18067..20088
DNA (2022bp) protein (674aa)
large Ala/Glu-rich protein id=7721619 bin=CNBR_ACT species=Salinibacterium sp. PAMC 21357 genus=Salinibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
Large Ala/Glu-rich protein {ECO:0000313|EMBL:EAR25617.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
large Ala/Glu-rich protein rbh
S10_scaffold_420_curated_15
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20140..21201
DNA (1062bp) protein (354aa)
AI-E2 family membrane protein id=7721618 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
Membrane protein {ECO:0000313|EMBL:EAR25618.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
hypothetical protein rbh
S10_scaffold_420_curated_16
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21205..21921)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AGZ4_9ACTN rbh
Uncharacterized protein {ECO:0000313|EMBL:EAR25619.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
alpha/beta hydrolase
S10_scaffold_420_curated_17
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21934..22233)
DNA (300bp) protein (100aa)
Uncharacterized protein id=7721616 bin=CNBR_ACT species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
ATP/GTP-binding protein {ECO:0000313|EMBL:KDP90406.1}; TaxID=1291006 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter cf. michiganensis LMG 26808.;"
hypothetical protein
S10_scaffold_420_curated_18
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22247..23980)
DNA (1734bp) protein (578aa)
CPA1 family Na+/H+ antiporter; K03316 monovalent cation:H+ antiporter, CPA1 family id=7721615 bin=CNBR_ACT species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
Na+/H+ antiporter, CPA1 family rbh
Sodium:proton antiporter {ECO:0000313|EMBL:KJC65274.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
S10_scaffold_420_curated_19
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24052..24693)
DNA (642bp) protein (214aa)
Secreted protein id=7721614 bin=CNBR_ACT species=Leifsonia xyli genus=Leifsonia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Secreted protein {ECO:0000313|EMBL:EPR76847.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
secreted protein
S10_scaffold_420_curated_20
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24750..25301)
DNA (552bp) protein (184aa)
Putative uncharacterized protein id=7721613 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:EAR25621.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
hypothetical protein
S10_scaffold_420_curated_21
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25316..26191)
DNA (876bp) protein (292aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41) rbh
Phosphatidate cytidylyltransferase id=7721612 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
S10_scaffold_420_curated_22
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26191..26742)
DNA (552bp) protein (184aa)
ribosome recycling factor n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI00028A0AA4 rbh
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
ribosome-recycling factor
S10_scaffold_420_curated_23
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26817..27671)
DNA (855bp) protein (285aa)
Uncharacterized protein id=7721610 bin=CNBR_ACT species=Saccharothrix espanaensis genus=Saccharothrix taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIJ21885.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
S10_scaffold_420_curated_24
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27683..28414)
DNA (732bp) protein (244aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
pyrH; hypothetical protein (EC:2.7.4.22) rbh
Uridylate kinase id=7721609 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
S10_scaffold_420_curated_25
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28507..28812
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Streptomyces scabrisporus RepID=UPI0003640A85
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EEP74780.1}; TaxID=219305 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
S10_scaffold_420_curated_26
unknown

Not on your lists

28812..29291
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Streptomyces scabrisporus RepID=UPI000378DFDB
S10_scaffold_420_curated_27
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29369..30196)
DNA (828bp) protein (276aa)
Elongation factor Ts id=7721608 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
elongation factor Ts rbh
S10_scaffold_420_curated_28
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(30233..31288)
DNA (1056bp) protein (352aa)
30S ribosomal protein S2 id=7721607 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
rpsB; 30S ribosomal protein S2 rbh
S10_scaffold_420_curated_29
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31471..32310
DNA (840bp) protein (280aa)
Contig_64, whole genome shotgun sequence {ECO:0000313|EMBL:KIU02386.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
Putative uncharacterized protein id=7721606 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
putative secreted metallopeptidase, family M23B
S10_scaffold_420_curated_30
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32225..34306)
DNA (2082bp) protein (694aa)
membrane protein n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI000288B97F rbh
Putative membrane protein {ECO:0000313|EMBL:EPR76839.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
putative drug exporters of the RND superfamily
Displaying items 1-30 of 46 in total

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