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S12_scaffold_332_curated

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Displaying items 1-30 of 50 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_332_curated_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..172
DNA (171bp) protein (57aa)
hypothetical protein n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI0002E4762D
Variovorax paradoxus strain MEDvA23 contig_69, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25291.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
putative NADH oxidoreductase
S12_scaffold_332_curated_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

301..492
DNA (192bp) protein (64aa)
Conserved HicB family protein n=1 Tax=Rickettsiella grylli RepID=A8PLJ8_9COXI
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
S12_scaffold_332_curated_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(625..921)
DNA (297bp) protein (99aa)
Virulence-associated protein I n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YK02_9DELT
XRE family plasmid maintenance system antidote protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
S12_scaffold_332_curated_4
uncultured Desulfobacterium sp., Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(934..1215)
DNA (282bp) protein (94aa)
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YK03_9DELT
Putative uncharacterized protein {ECO:0000313|EMBL:CBX31607.1}; TaxID=201089 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium; environmental samples.;" source="uncultured Desulfobacterium sp.;"
plasmid maintenance system killer
S12_scaffold_332_curated_5
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1406..2278)
DNA (873bp) protein (291aa)
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:CDH43713.1}; EC=5.4.99.2 {ECO:0000313|EMBL:CDH43713.1};; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
Methylmalonyl-CoA mutase, large subunit n=1 Tax=Thauera sp. 28 RepID=N6Y9P7_9RHOO
methylmalonyl-CoA mutase
S12_scaffold_332_curated_6
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2481..2777)
DNA (297bp) protein (99aa)
Tax=RBG_16_Betaproteobacteria_64_18_curated
S12_scaffold_332_curated_7
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2893..3489
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Burkholderia vietnamiensis (strain G4 / LMG 22486) RepID=A4JVT2_BURVG
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
S12_scaffold_332_curated_8
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3568..6828)
DNA (3261bp) protein (1087aa)
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2) rbh
methylmalonyl-CoA mutase n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI000360704E rbh
Tax=RBG_16_Betaproteobacteria_64_18_curated
S12_scaffold_332_curated_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7179..8702)
DNA (1524bp) protein (508aa)
AMP-binding protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2J550_9PROT rbh
AMP-dependent synthetase and ligase rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_332_curated_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8827..9015)
DNA (189bp) protein (63aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_332_curated_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9304..10560
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12C50_POLSJ rbh
hypothetical protein rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
S12_scaffold_332_curated_12
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10557..11681
DNA (1125bp) protein (375aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WRR2_9BURK rbh
lnt; apolipoprotein N-acyltransferase rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
S12_scaffold_332_curated_13
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11760..12815
DNA (1056bp) protein (352aa)
Putative transmembrane protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JK54_OLICO rbh
putative transmembrane protein rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
S12_scaffold_332_curated_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12893..13750
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HC99_9BRAD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_332_curated_15
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13747..15093)
DNA (1347bp) protein (449aa)
Histidine kinase id=1941782 bin=GWE2_Gallionellales_58_10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small rbh
integral membrane sensor signal transduction histidine kinase rbh
Tax=RBG_16_Gamma2_65_34_curated
S12_scaffold_332_curated_16
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15171..15836)
DNA (666bp) protein (222aa)
Two component transcriptional regulator, winged helix family id=1941779 bin=GWE2_Gallionellales_58_10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small rbh
transcriptional regulator rbh
Tax=RBG_16_Gamma2_65_34_curated
S12_scaffold_332_curated_17
Burkholderia sp. CCGE1001, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15863..16543)
DNA (681bp) protein (227aa)
Cytochrome b561/heavy metal translocating P-type ATPase fusion protein n=1 Tax=Burkholderia sp. CCGE1001 RepID=E8YNA8_9BURK
cytochrome b561/heavy metal translocating P-type ATPase fusion protein
Cytochrome b561/heavy metal translocating P-type ATPase fusion protein {ECO:0000313|EMBL:ADX55053.1}; TaxID=640510 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. CCGE1001.;"
S12_scaffold_332_curated_18
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16556..17053)
DNA (498bp) protein (166aa)
Diheme cytochrome c n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CQL6_SIDLE
cytochrome C
Tax=RBG_16_Gamma2_65_34_curated
S12_scaffold_332_curated_19
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17063..17485)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QNK4_9ZZZZ
hypothetical protein
Tax=RBG_16_Gamma2_65_34_curated
S12_scaffold_332_curated_20
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17820..19031)
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI000378D6FD rbh
putative lipoprotein rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
S12_scaffold_332_curated_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19358..21175)
DNA (1818bp) protein (606aa)
recQ; ATP-dependent DNA helicase RecQ (EC:3.6.4.12) rbh
ATP-dependent DNA helicase RecQ n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJT3_9PROT rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_332_curated_22
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21168..23006)
DNA (1839bp) protein (613aa)
glmS; glutamine-fructose-6-phosphate transaminase (EC:2.6.1.16)
glucosamine--fructose-6-phosphate aminotransferase n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0003129DE6 rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
S12_scaffold_332_curated_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23109..24461)
DNA (1353bp) protein (451aa)
glmU; N-acetylglucosamine-1-phosphate uridyltransferase (EC:2.7.7.23) rbh
glucosamine-1-phosphate N-acetyltransferase n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002DF33DA rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_332_curated_24
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25060..26808
DNA (1749bp) protein (583aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8T400_9GAMM rbh
yeeJ_[C]; Ig-like, group 1 rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
S12_scaffold_332_curated_25
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26965..28407)
DNA (1443bp) protein (481aa)
gltD; glutamate synthase small subunit oxidoreductase (EC:1.4.1.13) rbh
dihydropyrimidine dehydrogenase subunit A n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0003048D54 rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_332_curated_26
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28521..33200)
DNA (4680bp) protein (1560aa)
glutamate synthase n=1 Tax=Burkholderia sp. JPY347 RepID=UPI0003733AA2 rbh
glutamate synthase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
S12_scaffold_332_curated_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33350..34435)
DNA (1086bp) protein (362aa)
3-dehydroquinate synthase (EC:4.2.3.4) rbh
3-dehydroquinate synthase n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1GYG7_METFK rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_332_curated_28
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34417..34914)
DNA (498bp) protein (166aa)
aroK; shikimate kinase (EC:2.7.1.71)
shikimate kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036F0D4A
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_332_curated_29
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35081..37201)
DNA (2121bp) protein (707aa)
Type IV pilus secretin PilQ n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6APC6_9PROT rbh
type IV pilus secretin PilQ rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
S12_scaffold_332_curated_30
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37210..37746)
DNA (537bp) protein (179aa)
pilus assembly protein PilP n=1 Tax=Thiobacillus thioparus RepID=UPI000365AAD1
Pilus assembly protein PilP
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
Displaying items 1-30 of 50 in total

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