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S12_scaffold_395_curated

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_395_curated_1
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1464)
DNA (1464bp) protein (488aa)
Putative type II DNA modification enzyme n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WHG9_VEREI rbh
putative type II DNA modification enzyme rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
S12_scaffold_395_curated_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1763..2065
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GDF0_NITSI
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
S12_scaffold_395_curated_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2200..2487
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WJQ9_DELAC
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
S12_scaffold_395_curated_4
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2536..2778)
DNA (243bp) protein (81aa)
Ribonuclease VapC n=1 Tax=Thauera phenylacetica B4P RepID=N6ZQ77_9RHOO
PilT
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
S12_scaffold_395_curated_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3405..3827
DNA (423bp) protein (141aa)
Thioesterase superfamily protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MFA4_ACIET
Variovorax paradoxus strain MEDvA23 contig_33, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31420.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
thioesterase superfamily protein
S12_scaffold_395_curated_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3821..4396)
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI000368636B
putative dissimilatory sulfite reductase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
S12_scaffold_395_curated_7
unknown

Not on your lists

4689..4853
DNA (165bp) protein (55aa)

This feature has no annotations

S12_scaffold_395_curated_8
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4946..6031
DNA (1086bp) protein (362aa)
L-lactate dehydrogenase (EC:1.1.1.27)
Malate/lactate dehydrogenase n=1 Tax=Polaromonas sp. CF318 RepID=J2LP66_9BURK rbh
Lactate dehydrogenase {ECO:0000313|EMBL:KDP88506.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
S12_scaffold_395_curated_9
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6276..7070
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D368_BRAJP rbh
hypothetical protein rbh
Tax=RBG_16_Betaproteobacteria_66_20_curated
S12_scaffold_395_curated_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7586..7864
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003789E59
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_395_curated_11
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7965..8420)
DNA (456bp) protein (152aa)
Putative acetyltransferase n=2 Tax=Bordetella bronchiseptica RepID=K4TEL0_BORBO
acetyltransferase
Acetyltransferase (GNAT) domain protein {ECO:0000313|EMBL:KDD58828.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
S12_scaffold_395_curated_12
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8574..9362
DNA (789bp) protein (263aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQI8_PARL1 rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:GAK46535.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
short-chain dehydrogenase/reductase SDR rbh
S12_scaffold_395_curated_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9571..10971
DNA (1401bp) protein (467aa)
asparaginyl-tRNA synthetase n=1 Tax=Rudaea cellulosilytica RepID=UPI0003712B20 rbh
asnC; asparaginyl-tRNA synthetase rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_395_curated_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11012..11953)
DNA (942bp) protein (314aa)
Peptidase M28 n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IUT6_9GAMM rbh
aminopeptidase rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_395_curated_15
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12011..13852)
DNA (1842bp) protein (614aa)
AMP-forming long-chain acyl-CoA synthetase n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3Y7Q6_THIV6 rbh
AMP-forming long-chain acyl-CoA synthetase rbh
AMP-forming long-chain acyl-CoA synthetase {ECO:0000313|EMBL:AFL73024.1}; TaxID=765911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium; violascens).;"
S12_scaffold_395_curated_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13993..15195)
DNA (1203bp) protein (401aa)
atoB3; acetyl-CoA acetyltransferase (EC:2.3.1.9) rbh
Thiolase, N-terminal domain subfamily, putative n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QY91_9RHOB rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
S12_scaffold_395_curated_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15259..16698)
DNA (1440bp) protein (480aa)
3-Oxoacyl-(Acyl-carrier-protein) synthase III C terminal domain n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QY90_9RHOB rbh
hypothetical protein rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
S12_scaffold_395_curated_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16793..17386)
DNA (594bp) protein (198aa)
UPI00039FC365 related cluster n=1 Tax=unknown RepID=UPI00039FC365
nitroreductase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
S12_scaffold_395_curated_19
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17392..18240)
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00037AB8E7 rbh
hypothetical protein rbh
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
S12_scaffold_395_curated_20
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18237..19850)
DNA (1614bp) protein (538aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00035CF4E3 rbh
von Willebrand factor type A (vWA) domain-containing protein rbh
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
S12_scaffold_395_curated_21
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19847..21268)
DNA (1422bp) protein (474aa)
ATPase AAA n=1 Tax=Methyloversatilis universalis RepID=UPI0003690345 rbh
ATPase, ATPase associated with various cellular activities AAA_5 rbh
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
S12_scaffold_395_curated_22
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21351..26018)
DNA (4668bp) protein (1556aa)
glutamate synthase [NADPH] large subunit (EC:1.4.1.13)
glutamate synthase n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000317CDB0
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
S12_scaffold_395_curated_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26143..27492)
DNA (1350bp) protein (450aa)
glutamate dehydrogenase (EC:1.4.1.4) rbh
Glutamate dehydrogenase n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9LZJ9_GEODF rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
S12_scaffold_395_curated_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27614..30190)
DNA (2577bp) protein (859aa)
Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like id=4943368 bin=GWC2_Pelobacter_58_13 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good + rbh
phosphoenolpyruvate synthase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
S12_scaffold_395_curated_25
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30600..31235)
DNA (636bp) protein (212aa)
cytoplasmic chaperone TorD family protein
Cytoplasmic chaperone TorD family protein id=2299551 bin=GWB2_Nitrospirae_rel_47_37 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
S12_scaffold_395_curated_26
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31311..32081)
DNA (771bp) protein (257aa)
4Fe-4S binding domain protein
4Fe-4S ferredoxin iron-sulfur binding domain protein id=4708255 bin=GWC2_Nitrospirae_57_13 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
S12_scaffold_395_curated_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32116..34665)
DNA (2550bp) protein (850aa)
Molybdopterin oxidoreductase id=3977494 bin=GWF2_Lentisphaerae_52_8 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae rbh
molybdopterin oxidoreductase, ArrA like protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
S12_scaffold_395_curated_28
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34943..36280)
DNA (1338bp) protein (446aa)
arxR; two component, sigma54 specific, transcriptional regulator, Fis family id=12553693 bin=BDI species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
arxR; two component, sigma54 specific, transcriptional regulator, Fis family rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
S12_scaffold_395_curated_29
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36277..37737)
DNA (1461bp) protein (487aa)
arxS; integral membrane sensor signal transduction histidine kinase id=12553694 bin=BDI species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
arxS; integral membrane sensor signal transduction histidine kinase rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
S12_scaffold_395_curated_30
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37753..38604)
DNA (852bp) protein (284aa)
arxX; phosphonate-binding periplasmic protein id=12553695 bin=BDI species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
arxX; phosphonate-binding periplasmic protein rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
Displaying items 1-30 of 59 in total

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