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S12_scaffold_613_curated

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Displaying items 1-30 of 48 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_613_curated_1
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

720..1592
DNA (873bp) protein (291aa)
Sulfite reductase, dissimilatory-type alpha subunit n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQR1_9BURK
dsrA; sulfite reductase, dissimilatory-type subunit alpha
Tax=RBG_16_Betaproteobacteria_64_18_curated
S12_scaffold_613_curated_2
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1626..2708
DNA (1083bp) protein (361aa)
sulfite reductase, dissimilatory-type subunit beta (EC:1.8.99.3) rbh
Sulfite reductase, dissimilatory-type beta subunit id=2039185 bin=GWE2_Gallionellales_58_10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small rbh
Tax=RBG_16_Betaproteobacteria_64_18_curated
S12_scaffold_613_curated_3
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2962..3321
DNA (360bp) protein (120aa)
Sulfur relay protein TusD/DsrE id=1271004 bin=GWE1_Burkholderiales_65_30 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
dsrE; sulfur relay protein TusD/DsrE
Tax=RBG_16_Betaproteobacteria_64_18_curated
S12_scaffold_613_curated_4
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3344..3715
DNA (372bp) protein (124aa)
Sulfur relay protein TusC/DsrF n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CSI0_SIDLE
dsrF; sulfur relay protein TusC/DsrF
Tax=RBG_16_Betaproteobacteria_64_18_curated
S12_scaffold_613_curated_5
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3735..4034
DNA (300bp) protein (100aa)
dsrH; sulfur relay protein TusB/DsrH
DsrH protein; K07237 tRNA 2-thiouridine synthesizing protein B id=12496408 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tax=RBG_16_Betaproteobacteria_64_18_curated
S12_scaffold_613_curated_6
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4147..4479
DNA (333bp) protein (111aa)
Sulfur relay protein, TusE/DsrC/DsvC family n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQQ6_9BURK
dsrC; sulfite reductase
Tax=RBG_16_Betaproteobacteria_64_18_curated
S12_scaffold_613_curated_7
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4574..5311
DNA (738bp) protein (246aa)
DsrM protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B7V3_9PROT rbh
dsrM; putative DsrM protein
Tax=CG_Rhodocyc_01
S12_scaffold_613_curated_8
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5313..6806
DNA (1494bp) protein (498aa)
Fe-S oxidoreductase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQQ4_9BURK rbh
hypothetical protein rbh
Tax=RBG_16_Betaproteobacteria_64_18_curated
S12_scaffold_613_curated_9
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6829..8772
DNA (1944bp) protein (648aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase id=5080915 bin=GWF1_Burkholderiales_GWF1_66_17 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
dsrL; FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Tax=RBG_16_Betaproteobacteria_64_18_curated
S12_scaffold_613_curated_10
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8853..10808
DNA (1956bp) protein (652aa)
NADPH-dependent glutamate synthase beta chain-like oxidoreductase id=1271010 bin=GWE1_Burkholderiales_65_30 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
FAD-dependent pyridine nucleotide-disulfide oxidoreductase rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
S12_scaffold_613_curated_11
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10904..11302
DNA (399bp) protein (133aa)
Multiheme cytochrome with 3 CxxCH motifs, non-cytoplasmic, has signal peptide.
dsrJ; hypothetical protein
hypothetical protein id=12496413 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tax=RBG_16_Betaproteobacteria_64_18_curated
S12_scaffold_613_curated_12
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11299..12045
DNA (747bp) protein (249aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ADJ1_9PROT rbh
dsrO; 4Fe-4S ferredoxin iron-sulfur binding domain protein rbh
Tax=RBG_16_Betaproteobacteria_64_18_curated
S12_scaffold_613_curated_13
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12047..13240
DNA (1194bp) protein (398aa)
Molybdopterin oxidoreductase, membrane subunit DsrP protein n=1 Tax=mine drainage metagenome RepID=E6QST8_9ZZZZ rbh
molybdopterin oxidoreductase, membrane subunit rbh
Tax=RBG_16_Betaproteobacteria_64_18_curated
S12_scaffold_613_curated_14
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13272..14675
DNA (1404bp) protein (468aa)
cobyrinic acid a,c-diamide synthase; K02224 cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] id=5080919 bin=GWF1_Burkholderiales_GWF1_66_17 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
dsrN; cobyrinic acid a,c-diamide synthase
Tax=CG_Rhodocyc_01
S12_scaffold_613_curated_15
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14707..15501
DNA (795bp) protein (265aa)
Siroheme synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DG40_9PROT rbh
uroporphyrin-III C-methyltransferase rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
S12_scaffold_613_curated_16
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15554..16231)
DNA (678bp) protein (226aa)
LuxR family transcriptional regulator n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AEI8_9PROT
two component LuxR family transcriptionalregulator
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
S12_scaffold_613_curated_17
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16425..17528)
DNA (1104bp) protein (368aa)
GAF sensor signal transduction histidine kinase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B0E9_9PROT rbh
GAF sensor signal transduction histidine kinase
Tax=CG_Rhodocyc_01
S12_scaffold_613_curated_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17876..18103
DNA (228bp) protein (76aa)
hypothetical protein; K04085 tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] id=12495205 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_613_curated_19
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18362..18979
DNA (618bp) protein (206aa)
hypothetical protein
Putative uncharacterized protein id=1357069 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RBG_16_Betaproteobacteria_64_18_curated
S12_scaffold_613_curated_20
GWE2_Gallionellales_58_10_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19037..20371
DNA (1335bp) protein (445aa)
Uncharacterized protein id=2039127 bin=GWE2_Gallionellales_58_10 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small rbh
long-chain fatty acid transport protein rbh
Tax=GWE2_Gallionellales_58_10_curated
S12_scaffold_613_curated_21
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20480..21391
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABF2_9PROT rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAO30534.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
S12_scaffold_613_curated_22
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21447..22562)
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Thauera sp. 63 RepID=N6XCC7_9RHOO rbh
YeeE/YedE rbh
Tax=RBG_16_Betaproteobacteria_64_18_curated
S12_scaffold_613_curated_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22758..23363)
DNA (606bp) protein (202aa)
Putative uncharacterized protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CSK0_SIDLE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_613_curated_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23695..24135
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ACL3_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
S12_scaffold_613_curated_25
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24360..24830
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Thauera sp. 63 RepID=N6Y721_9RHOO
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_613_curated_26
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24868..25179
DNA (312bp) protein (104aa)
Sulfur oxidation protein SoxZ n=1 Tax=Polaromonas sp. CF318 RepID=J2TT65_9BURK
SoxZ
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_613_curated_27
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25268..26143
DNA (876bp) protein (292aa)
Sulfur oxidation protein SoxA n=1 Tax=Pandoraea pnomenusa 3kgm RepID=V5PZN3_9BURK rbh
soxA; sulfur oxidation protein soxA
Tax=CG_Rhodocyc_01
S12_scaffold_613_curated_28
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26159..26767
DNA (609bp) protein (203aa)
Uncharacterized conserved protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SV45_JANMA
soxX; SoxX protein
Tax=CG_Rhodocyc_01
S12_scaffold_613_curated_29
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26781..28502
DNA (1722bp) protein (574aa)
5'-Nucleotidase/2',3'-cyclic phosphodiesterase or related esterase n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0K5V0_CUPNH rbh
h16_A3563; 5'-nucleotidase rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_613_curated_30
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28559..29545
DNA (987bp) protein (329aa)
hypothetical protein n=1 Tax=Methyloversatilis sp. NVD RepID=UPI000372C871 rbh
Beta-lactamase {ECO:0000313|EMBL:GAO36956.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
soxH; beta lactamase rbh
Displaying items 1-30 of 48 in total

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