ggKbase home page

S12_scaffold_492_curated

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_492_curated_1
unknown

Not on your lists

2..136
DNA (135bp) protein (45aa)

This feature has no annotations

S12_scaffold_492_curated_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

547..1308
DNA (762bp) protein (254aa)
Short-chain dehydrogenase n=2 Tax=Bacillus RepID=U5L6J8_9BACI
short-chain dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_492_curated_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1595..2275)
DNA (681bp) protein (227aa)
hypothetical protein id=3716788 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
S12_scaffold_492_curated_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2550..3227)
DNA (678bp) protein (226aa)
trmB; tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33) rbh
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AB69_9PROT rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_492_curated_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3269..4057)
DNA (789bp) protein (263aa)
Thiazole synthase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AIM5_9PROT rbh
thiazole synthase rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
S12_scaffold_492_curated_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4065..4541)
DNA (477bp) protein (159aa)
putative redox protein, regulator of disulfide bond formation
OsmC-like protein id=5026624 bin=GWA2__Bacteriovorax-rel_49_15 species=Saccharopolyspora erythraea genus=Saccharopolyspora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2__Bacteriovorax-rel_49_15 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
S12_scaffold_492_curated_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4544..4747)
DNA (204bp) protein (68aa)
Thiamine biosynthesis protein ThiS n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1KCN0_AZOSB
thiS; thiamine biosynthesis protein ThiS
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_492_curated_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4887..6035)
DNA (1149bp) protein (383aa)
MFS transporter n=1 Tax=Kiloniella laminariae RepID=UPI0003760B26 rbh
major facilitator superfamily MFS_1 rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
S12_scaffold_492_curated_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6156..6479
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1J9U1_9ARCH
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
S12_scaffold_492_curated_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6571..8487
DNA (1917bp) protein (639aa)
Multiheme cytochrome with 8 CxxCH motifs, non-cytoplasmic, has signal peptide.
Putative uncharacterized protein id=1715195 bin=GWB2_Geobacter-like_52_12 species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good rbh
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
S12_scaffold_492_curated_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8779..9993
DNA (1215bp) protein (405aa)
Chromate transporter, chromate ion transporter (CHR) family id=4329541 bin=GWC2_Methylomirabilis_70_16 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
chrA1; chromate transport protein ChrA
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
S12_scaffold_492_curated_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10034..10351)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6Q1_NITMU
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
S12_scaffold_492_curated_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10335..10544)
DNA (210bp) protein (70aa)
Heavy metal-associated domain protein n=1 Tax=Kingella denitrificans ATCC 33394 RepID=F0F2E6_9NEIS
mercuric-ion-binding periplasmic protein MerP
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
S12_scaffold_492_curated_14
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10602..13001)
DNA (2400bp) protein (800aa)
Heavy metal translocating P-type ATPase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AHL2_9PROT rbh
heavy metal translocating P-type ATPase rbh
Tax=RBG_16_Betaproteobacteria_64_18_curated
S12_scaffold_492_curated_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13163..14092
DNA (930bp) protein (310aa)
Putative uncharacterized protein id=2153977 bin=GWB2_Chloroflexi_54_36 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_492_curated_16
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14255..14761)
DNA (507bp) protein (169aa)
Universal stress protein UspA-like protein n=1 Tax=Acidovorax sp. CF316 RepID=J1EPA8_9BURK
universal stress protein UspA
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
S12_scaffold_492_curated_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14852..17686)
DNA (2835bp) protein (945aa)
Calcium-translocating P-type ATPase, PMCA-type id=4960340 bin=GWC2_Syntrophobacterales_56_13 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good + rbh
P-type HAD superfamily ATPase rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_492_curated_18
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18170..19198
DNA (1029bp) protein (343aa)
RuBisCO operon transcriptional regulator n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH46_9PROT rbh
LysR family transcriptional regulator rbh
Tax=RBG_16_Betaproteobacteria_66_20_curated
S12_scaffold_492_curated_19
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19252..20199)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21VI7_RHOFD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD70216.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
S12_scaffold_492_curated_20
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20203..21675)
DNA (1473bp) protein (491aa)
Membrane bound O-acyl transferase, MBOAT n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21VI6_RHOFD rbh
membrane bound O-acyl transferase, MBOAT rbh
Membrane bound O-acyl transferase, MBOAT {ECO:0000313|EMBL:ABD70217.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
S12_scaffold_492_curated_21
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21712..22311)
DNA (600bp) protein (200aa)
Putative uncharacterized protein id=1731585 bin=GWB2_Proteobacteria_55_19 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD70218.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
S12_scaffold_492_curated_22
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22341..22898)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21VI4_RHOFD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD70219.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
S12_scaffold_492_curated_23
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22895..23185)
DNA (291bp) protein (97aa)
Putative uncharacterized protein id=1731579 bin=GWB2_Proteobacteria_55_19 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD70220.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
S12_scaffold_492_curated_24
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23185..24156)
DNA (972bp) protein (324aa)
Transketolase-like n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21VI2_RHOFD rbh
transketolase-like protein rbh
Transketolase-like {ECO:0000313|EMBL:ABD70221.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
S12_scaffold_492_curated_25
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24167..25390)
DNA (1224bp) protein (408aa)
Twin-arginine translocation pathway signal id=1731570 bin=GWB2_Proteobacteria_55_19 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good rbh
twin-arginine translocation pathway signal protein rbh
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:ABD70222.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
S12_scaffold_492_curated_trna_1
unknown

Not on your lists

25616..25688
DNA (73bp)
transferRNA Gly
S12_scaffold_492_curated_26
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25897..27069
DNA (1173bp) protein (391aa)
A/G-specific adenine glycosylase n=1 Tax=Thauera phenylacetica B4P RepID=N6ZT84_9RHOO rbh
A/G-specific adenine glycosylase rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
S12_scaffold_492_curated_27
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27085..27777)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BPA2_NEPCE
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
S12_scaffold_492_curated_28
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27774..29861)
DNA (2088bp) protein (696aa)
TPR repeat-containing protein n=3 Tax=Burkholderia thailandensis RepID=I6AFC6_BURTH rbh
tetratricopeptide repeat family protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
S12_scaffold_492_curated_29
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29858..30481)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1Z9B8_METPB
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
Displaying items 1-30 of 35 in total

View Taxonomy