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S12_scaffold_229_curated

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Displaying items 1-30 of 77 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_229_curated_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(169..1374)
DNA (1206bp) protein (402aa)
tyrosyl-tRNA synthetase (EC:6.1.1.1) rbh
Tyrosine--tRNA ligase n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0C1_9PROT rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1434..2750
DNA (1317bp) protein (439aa)
Peptidase M23 n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B7A1_9PROT rbh
peptidase M23 rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3037..3387)
DNA (351bp) protein (117aa)
iron--sulfur cluster insertion protein ErpA n=1 Tax=Rhodocyclaceae RepID=UPI000376976E
iron-binding protein ErpA
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3431..3841)
DNA (411bp) protein (137aa)
integral membrane protein CcmA involved in cell shape determination
Putative uncharacterized protein id=1887853 bin=GWE2_Gallionellales_58_10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3937..4683)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AJ62_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4692..5720)
DNA (1029bp) protein (343aa)
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CMK8_SIDLE rbh
argC; N-acetyl-gamma-glutamyl-phosphate reductase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5828..6223)
DNA (396bp) protein (132aa)
30S ribosomal protein S9 n=1 Tax=Rhodocyclaceae RepID=UPI00037B073C
30S ribosomal protein S9
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6227..6655)
DNA (429bp) protein (143aa)
50S ribosomal protein L13 n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2I582_9BURK
rplM; 50S ribosomal protein L13
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7219..7635
DNA (417bp) protein (139aa)
OsmC family protein n=2 Tax=Burkholderia RepID=I5CNE4_9BURK
OsmC family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7687..8316)
DNA (630bp) protein (210aa)
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase n=1 Tax=Azoarcus toluclasticus RepID=UPI00037BD2C4
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_11
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8614..9645
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0003706CA6
gram-negative porin family protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
S12_scaffold_229_curated_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9757..10563)
DNA (807bp) protein (269aa)
indole-3-glycerol-phosphate synthase n=1 Tax=Azoarcus toluclasticus RepID=UPI0003788537 rbh
trpC; indole-3-glycerol-phosphate synthase rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10604..11641)
DNA (1038bp) protein (346aa)
anthranilate phosphoribosyltransferase (EC:2.4.2.18) rbh
Anthranilate phosphoribosyltransferase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRJ6_ACCPU rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11652..12212)
DNA (561bp) protein (187aa)
anthranilate synthase component II (EC:4.1.3.27) rbh
Glutamine amidotransferase of anthranilate synthase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGS0_THIDA rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12215..13693)
DNA (1479bp) protein (493aa)
anthranilate synthase component I (EC:4.1.3.27) rbh
Anthranilate synthase component I n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRL1_ACCPU rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13849..14544)
DNA (696bp) protein (232aa)
Phosphoglycolate phosphatase n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GIK8_NITSI
phosphoglycolate phosphatase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14774..15439)
DNA (666bp) protein (222aa)
rpe; ribulose-5-phosphate 3-epimerase (EC:5.1.3.1) rbh
Ribulose-phosphate 3-epimerase n=2 Tax=Herbaspirillum RepID=I3CRJ9_9BURK rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15555..15938
DNA (384bp) protein (128aa)
cobalt transporter n=1 Tax=Thiobacillus thioparus RepID=UPI00037B613C
Mg2+/Co2+ transport protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16068..16175)
DNA (108bp) protein (36aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16198..17475
DNA (1278bp) protein (426aa)
Membrane-bound lytic murein transglycosylase n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QK30_AZOSU rbh
membrane-bound lytic murein transglycosylase rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17502..18227)
DNA (726bp) protein (242aa)
Candidate Thiol:disulfide interchange protein dsbC n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XZI7_RAMTT
dsbC; Thiol:disulfide interchange protein dsbC
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18249..19409)
DNA (1161bp) protein (387aa)
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B7D8_9PROT rbh
ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_trna_1
unknown

Not on your lists

19607..19680
DNA (74bp)
transferRNA Met
S12_scaffold_229_curated_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19795..20115)
DNA (321bp) protein (107aa)
Multiheme cytochrome with 3 CxxCH motifs, InterPro shows C(7)-type cytochrome triheme domain (IPR026352) and signal peptide OR transmembrane anchor.
Putative uncharacterized protein id=3846236 bin=GWC2_Nitrospirae_57_13 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_24
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20280..20897)
DNA (618bp) protein (206aa)
Putative ParA protein n=2 Tax=Rickettsia amblyommii RepID=H8K6E0_RICAG
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
S12_scaffold_229_curated_25
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21131..21451
DNA (321bp) protein (107aa)
Hypothetical secreted protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K3I9_AZOSB
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
S12_scaffold_229_curated_26
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21448..22992
DNA (1545bp) protein (515aa)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DR02_9PROT rbh
tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22989..23933
DNA (945bp) protein (315aa)
PhoH family protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRT7_ACCPU rbh
PhoH family protein rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_28
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23908..24408
DNA (501bp) protein (167aa)
Endoribonuclease YbeY n=1 Tax=Azoarcus sp. KH32C RepID=H0PX76_9RHOO
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S12_scaffold_229_curated_29
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24471..25304
DNA (834bp) protein (278aa)
CBS domain containing protein id=1940837 bin=GWE2_Gallionellales_58_10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small rbh
corC; CBS domain-containing protein rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
Displaying items 1-30 of 77 in total

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