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S12_scaffold_315_curated

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Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_315_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..700
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI0003800EDA
Putative potassium efflux transporter {ECO:0000313|EMBL:KFC63624.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
potassium efflux system protein
S12_scaffold_315_curated_2
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(756..1172)
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003692F27
Bradyrhizobium elkanii strain UASWS1015 Contig182, whole genome shotgun sequence {ECO:0000313|EMBL:KIU46344.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
cyclophilin-like superfamily protein
S12_scaffold_315_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1296..2369)
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D944B8 rbh
Putative esterase of the alpha-beta hydrolase superfamily protein {ECO:0000313|EMBL:KFC74162.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
patatin rbh
S12_scaffold_315_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2366..3151)
DNA (786bp) protein (262aa)
cytochrome C biogenesis protein CcmE n=1 Tax=Bradyrhizobium japonicum RepID=UPI000373E791 rbh
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:KFC74161.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
3-hydroxybutyrate dehydrogenase
S12_scaffold_315_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3264..3812
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036A0DC5
Fur family transcriptional regulator, zinc uptake regulator {ECO:0000313|EMBL:KFC74160.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Fe2+/Zn2+ uptake regulation protein-like protein
S12_scaffold_315_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3826..5100
DNA (1275bp) protein (425aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.1 {ECO:0000256|SAAS:SAAS00088795};; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000363DCD1 rbh
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase rbh
S12_scaffold_315_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5179..7143
DNA (1965bp) protein (655aa)
Probable potassium transport system protein kup n=1 Tax=Microvirga sp. WSM3557 RepID=I4YM53_9RHIZ rbh
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
K potassium transporter rbh
S12_scaffold_315_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7274..8152)
DNA (879bp) protein (293aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F2490C rbh
Uncharacterized protein {ECO:0000313|EMBL:KFC63671.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein rbh
S12_scaffold_315_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8290..8772)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000301AC3F
Putative transcriptional regulatory protein, MarR family {ECO:0000313|EMBL:KFC63672.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
transcriptional regulator TrmB
S12_scaffold_315_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8871..9458)
DNA (588bp) protein (196aa)
UPI0003CDF538 related cluster n=1 Tax=unknown RepID=UPI0003CDF538
Putative NAD(P)H dehydrogenase (Quinone) protein {ECO:0000313|EMBL:KFC63673.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
NAD(P)H dehydrogenase (quinone)
S12_scaffold_315_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9464..10888)
DNA (1425bp) protein (475aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000309DF28 rbh
FAD linked oxidase domain protein {ECO:0000313|EMBL:KFC63674.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
FAD linked oxidase domain-containing protein rbh
S12_scaffold_315_curated_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10885..12333)
DNA (1449bp) protein (483aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E8FB92 rbh
Cytosine deaminase-like metal-dependent hydrolase {ECO:0000313|EMBL:KFC63675.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
amidohydrolase rbh
S12_scaffold_315_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12402..13262
DNA (861bp) protein (287aa)
Bifunctional protein FolD n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2Y6U7_9PROT rbh
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase rbh
S12_scaffold_315_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13378..14781)
DNA (1404bp) protein (468aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
dihydrolipoamide dehydrogenase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F76E18 rbh
dihydrolipoamide dehydrogenase rbh
S12_scaffold_315_curated_15
Mesorhizobium sp. LNJC386A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14819..15562)
DNA (744bp) protein (248aa)
Glucose-1-dehydrogenase {ECO:0000313|EMBL:ESY34286.1}; EC=1.1.1.47 {ECO:0000313|EMBL:ESY34286.1};; TaxID=1287270 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC386A00.;"
UPI0003CE4A8C related cluster n=1 Tax=unknown RepID=UPI0003CE4A8C rbh
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein rbh
S12_scaffold_315_curated_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15579..16811)
DNA (1233bp) protein (411aa)
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; EC=2.3.1.61;; 2-oxoglutarate dehydrogenase complex component E2 {ECO:0000256|RuleBase:RU361138}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Dihydrolipoamide succinyltransferase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8ILB1_AZOC5 rbh
dihydrolipoamide succinyltransferase rbh
S12_scaffold_315_curated_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16919..19876)
DNA (2958bp) protein (986aa)
MFS transporter n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000315E5A4 rbh
2-oxoglutarate dehydrogenase, E1 subunit {ECO:0000313|EMBL:KFC63680.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
sucA; 2-oxoglutarate dehydrogenase E1 component rbh
S12_scaffold_315_curated_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20034..20918)
DNA (885bp) protein (295aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UCF2_METS4 rbh
succinyl-CoA synthetase subunit alpha rbh
S12_scaffold_315_curated_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20928..22124)
DNA (1197bp) protein (399aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
succinyl-CoA synthetase subunit beta (EC:6.2.1.5) rbh
Succinyl-CoA ligase [ADP-forming] subunit beta n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P288_9BRAD rbh
S12_scaffold_315_curated_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22203..23165)
DNA (963bp) protein (321aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
malate dehydrogenase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031105B5 rbh
malate dehydrogenase rbh
S12_scaffold_315_curated_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23487..24086)
DNA (600bp) protein (200aa)
Transcriptional regulator, TetR family n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UCE9_METS4
Putative Transcriptional regulatory protein, TetR family {ECO:0000313|EMBL:KFC63684.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
TetR family transcriptional regulator
S12_scaffold_315_curated_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24089..25267)
DNA (1179bp) protein (393aa)
Putative ATPase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YML1_9RHIZ rbh
Putative ATPase (YhcM) AFG1 family protein {ECO:0000313|EMBL:KFC63685.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
AFG1 family ATPase rbh
S12_scaffold_315_curated_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25472..26302)
DNA (831bp) protein (277aa)
Periplasmic component of amino acid ABC-type transporter/signal transduction system n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VI24_9RHIZ rbh
Putative ABC transporter, substrate-binding protein {ECO:0000313|EMBL:KFC69657.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter substrate-binding protein
S12_scaffold_315_curated_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26339..27133)
DNA (795bp) protein (265aa)
ABC transporter n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PKR8_9RHIZ rbh
ABC-type polar amino acid transport system, ATPase component {ECO:0000313|EMBL:KFC69656.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter ATP-binding protein
S12_scaffold_315_curated_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27130..28023)
DNA (894bp) protein (298aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Phyllobacterium sp. YR531 RepID=J2V201_9RHIZ rbh
ABC transporter permease {ECO:0000313|EMBL:KFC69655.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
polar amino acid ABC transporter inner membrane subunit rbh
S12_scaffold_315_curated_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28020..29435)
DNA (1416bp) protein (472aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
argininosuccinate lyase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DA73A2 rbh
argininosuccinate lyase rbh
S12_scaffold_315_curated_27
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29531..30457
DNA (927bp) protein (309aa)
Transcriptional regulator n=1 Tax=Phyllobacterium sp. YR531 RepID=J3C6S6_9RHIZ
Putative Transcriptional Regulator, LysR family Gcv operon activator {ECO:0000313|EMBL:KFC69653.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
LysR family transcriptional regulator
S12_scaffold_315_curated_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30515..30901
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248B8B9
Uncharacterized protein {ECO:0000313|EMBL:KFC72890.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
S12_scaffold_315_curated_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30905..31612)
DNA (708bp) protein (236aa)
chemotaxis protein CheY n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EEE5C7 rbh
Phosphate regulon transcriptional regulatory protein phoB {ECO:0000313|EMBL:KFC70009.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
two component transcriptional regulator rbh
S12_scaffold_315_curated_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31626..32345)
DNA (720bp) protein (240aa)
PhoU family transcriptional regulator n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000318864F rbh
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
phosphate uptake regulator PhoU rbh
Displaying items 1-30 of 61 in total

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