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S12_scaffold_784_curated

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_784_curated_1
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(75..503)
DNA (429bp) protein (143aa)
PAS sensor protein n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000348EDE7
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ45536.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
signal transduction histidine kinase
S12_scaffold_784_curated_2
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(812..4276)
DNA (3465bp) protein (1155aa)
UPI0003D012A5 related cluster n=1 Tax=unknown RepID=UPI0003D012A5 rbh
Uncharacterized protein {ECO:0000313|EMBL:ESZ11289.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
AAA domain-containing protein rbh
S12_scaffold_784_curated_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4276..5520)
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NRE4_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS32942.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
metallophosphoesterase rbh
S12_scaffold_784_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5976..6332
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI00037AA07F
Transcriptional regulator, MucR family {ECO:0000313|EMBL:KFC73413.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
MucR family transcriptional regulator
S12_scaffold_784_curated_5
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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6419..6763
DNA (345bp) protein (115aa)
Putative transposon protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4V5_POLGS
transposon protein
Putative transposon protein {ECO:0000313|EMBL:ADZ69047.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
S12_scaffold_784_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7069..7902
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000376547A rbh
Transglutaminase domain protein {ECO:0000313|EMBL:KFC75384.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
transglutaminase domain-containing protein
S12_scaffold_784_curated_7
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8076..9083)
DNA (1008bp) protein (336aa)
Signal transduction protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I4F8_AZOC5 rbh
signal transduction protein rbh
Signal transduction protein {ECO:0000313|EMBL:BAF87724.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
S12_scaffold_784_curated_8
unknown

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comp(9172..9768)
DNA (597bp) protein (199aa)

This feature has no annotations

S12_scaffold_784_curated_9
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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9808..10230
DNA (423bp) protein (141aa)
Cysteine desulfurase n=1 Tax=Rhodovulum sp. PH10 RepID=J6IWM0_9RHOB
Cysteine desulfurase {ECO:0000313|EMBL:EJW09755.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
S12_scaffold_784_curated_10
Marinobacter sp. ES-1, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10471..11685)
DNA (1215bp) protein (405aa)
Uncharacterized protein n=1 Tax=Marinobacter sp. ES-1 RepID=U7G1I5_9ALTE rbh
Uncharacterized protein {ECO:0000313|EMBL:ERP91352.1}; TaxID=1396858 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. ES-1.;"
putative drug resistance transporter rbh
S12_scaffold_784_curated_11
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11864..12280)
DNA (417bp) protein (139aa)
Putative transcriptional regulator, AsnC family n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X4P6_OCHA4
asnC family protein
AsnC family transcriptional regulator {ECO:0000313|EMBL:EXL06189.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
S12_scaffold_784_curated_12
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12412..14064
DNA (1653bp) protein (551aa)
Peptidase M20 n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X4Q2_OCHA4 rbh
Peptidase M20 {ECO:0000313|EMBL:EXL06184.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
peptidase M20 rbh
S12_scaffold_784_curated_13
unknown

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14064..14192
DNA (129bp) protein (43aa)

This feature has no annotations

S12_scaffold_784_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14449..14634
DNA (186bp) protein (62aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC69400.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
S12_scaffold_784_curated_15
unknown

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14631..14945
DNA (315bp) protein (105aa)

This feature has no annotations

S12_scaffold_784_curated_16
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14938..15183
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI000360420E
Signal peptide protein {ECO:0000313|EMBL:EZQ16366.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
S12_scaffold_784_curated_17
Mesorhizobium sp. LSJC264A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15193..15489
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003610C65
Glutathione synthetase {ECO:0000313|EMBL:ESX10638.1}; TaxID=1287321 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC264A00.;"
hypothetical protein
S12_scaffold_784_curated_18
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15820..16077
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQ03_9RHIZ
Rv0623 family protein transcription factor
Rv0623 family protein transcription factor {ECO:0000313|EMBL:CDN50714.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
S12_scaffold_784_curated_19
unknown

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comp(16106..16504)
DNA (399bp) protein (133aa)

This feature has no annotations

S12_scaffold_784_curated_20

Not on your lists

16554..16937
DNA (384bp) protein (128aa)
bis(5''''-nucleosyl)-tetraphosphatase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B58B5A
Uncharacterized protein {ECO:0000313|EMBL:KKN82906.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
metallophosphoesterase
S12_scaffold_784_curated_21
Mesorhizobium sp. LNJC386A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16969..18060
DNA (1092bp) protein (364aa)
DNA polymerase III subunit epsilon DnaQ-like protein (EC:2.7.7.7)
DNA polymerase III subunit epsilon n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003B6F86D rbh
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:ESY29560.1}; TaxID=1287270 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC386A00.;"
S12_scaffold_784_curated_22
unknown

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18165..18386
DNA (222bp) protein (74aa)

This feature has no annotations

S12_scaffold_784_curated_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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18383..20452
DNA (2070bp) protein (690aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ATP-dependent DNA helicase, Rep family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QH06_NITHX rbh
UvrD/REP helicase rbh
S12_scaffold_784_curated_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20449..20742
DNA (294bp) protein (98aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC73926.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
S12_scaffold_784_curated_25
unknown

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20757..21002
DNA (246bp) protein (82aa)

This feature has no annotations

S12_scaffold_784_curated_26
unknown

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21002..21220
DNA (219bp) protein (73aa)

This feature has no annotations

S12_scaffold_784_curated_27
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21232..21954
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QW44_METTR
Uncharacterized protein {ECO:0000313|EMBL:KFC63952.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
S12_scaffold_784_curated_28
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22205..22894
DNA (690bp) protein (230aa)
hemolysin secretion protein D n=1 Tax=Methylobacterium sp. MB200 RepID=UPI00034C5B1D
secretion protein HlyD family protein
Secretion protein HlyD family protein {ECO:0000313|EMBL:ABY28979.1}; Flags: Precursor;; TaxID=419610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain PA1).;"
Displaying 28 items

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