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S12_scaffold_378_curated

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_378_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..193
DNA (192bp) protein (64aa)
General L-amino acid transport ATP-binding protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EU99_BRASB
General L-amino acid transport ATP-binding protein {ECO:0000313|EMBL:KFC69074.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
aapP; general L-amino acid transport ATP-binding protein
S12_scaffold_378_curated_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

315..596
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7XWN7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC69073.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
S12_scaffold_378_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(681..1841)
DNA (1161bp) protein (387aa)
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TA66_ACIDE rbh
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:KFC69072.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
glycerophosphoryl diester phosphodiesterase rbh
S12_scaffold_378_curated_4
unknown

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comp(1989..2237)
DNA (249bp) protein (83aa)

This feature has no annotations

S12_scaffold_378_curated_5
unknown

Not on your lists

comp(2455..2592)
DNA (138bp) protein (46aa)

This feature has no annotations

S12_scaffold_378_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2773..4071
DNA (1299bp) protein (433aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E39C27 rbh
tRNA/rRNA cytosine-C5-methylase {ECO:0000313|EMBL:KFC69070.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Fmu (Sun) domain-containing protein rbh
S12_scaffold_378_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4186..4872
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFK8_9RHIZ rbh
Hydrolase {ECO:0000313|EMBL:EYR77550.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hydrolase
S12_scaffold_378_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4942..6510
DNA (1569bp) protein (523aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
guaA1; GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase) (GMP synthetase) (EC:6.3.5.2) rbh
GMP synthase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030154B7 rbh
S12_scaffold_378_curated_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6609..9362)
DNA (2754bp) protein (918aa)
ABC transporter ATP-binding protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AAK3_RHIRD rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EMS94952.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
ATP-binding protein
S12_scaffold_378_curated_10
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9359..10312)
DNA (954bp) protein (318aa)
Peptide ABC transporter permease n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AV73_RHIRD rbh
Peptide ABC transporter permease {ECO:0000313|EMBL:EMS94951.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
peptide ABC transporter permease
S12_scaffold_378_curated_11
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10339..11910)
DNA (1572bp) protein (524aa)
Peptide ABC transporter n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8B661_RHIRD rbh
Peptide ABC transporter {ECO:0000313|EMBL:EMS94950.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
twin-arginine translocation pathway signal
S12_scaffold_378_curated_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12303..14066)
DNA (1764bp) protein (588aa)
5-oxoprolinase (EC:3.5.2.9) rbh
5-oxoprolinase (ATP-hydrolyzing) n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2TB96_BURPP rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
S12_scaffold_378_curated_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14077..16122)
DNA (2046bp) protein (682aa)
5-oxoprolinase (EC:3.5.2.9) rbh
5-oxoprolinase (ATP-hydrolyzing) n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2TB97_BURPP rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
S12_scaffold_378_curated_14
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16153..17283)
DNA (1131bp) protein (377aa)
FAD dependent oxidoreductase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q123Q8_POLSJ rbh
FAD dependent oxidoreductase rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:ABE46234.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
S12_scaffold_378_curated_15
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17280..18680)
DNA (1401bp) protein (467aa)
LecG n=1 Tax=Rhizobium radiobacter RepID=A5WXU0_RHIRD rbh
LecG {ECO:0000313|EMBL:AAZ50408.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
opine oxidase subunit A rbh
S12_scaffold_378_curated_16
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18677..18973)
DNA (297bp) protein (99aa)
Putative sarcosine oxidase alpha subunit n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZAI1_9BRAD
putative sarcosine oxidase alpha subunit
Putative sarcosine oxidase alpha subunit {ECO:0000313|EMBL:BAM90356.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
S12_scaffold_378_curated_17
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19154..20119
DNA (966bp) protein (322aa)
Putative transcriptional regulator, LysR family n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RRW6_9BRAD rbh
Putative transcriptional regulator, LysR family {ECO:0000313|EMBL:CCD84693.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
putative transcriptional regulator, LysR family rbh
S12_scaffold_378_curated_18
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20193..21080
DNA (888bp) protein (296aa)
LysR family transcriptional regulator n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0DYZ2_PSEDT rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:KJF65748.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
LysR family transcriptional regulator rbh
S12_scaffold_378_curated_19
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21297..22322
DNA (1026bp) protein (342aa)
Extracellular solute-binding protein, family 1 n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q123I5_POLSJ rbh
extracellular solute-binding protein rbh
Extracellular solute-binding protein, family 1 {ECO:0000313|EMBL:ABE46307.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
S12_scaffold_378_curated_20
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22372..23439
DNA (1068bp) protein (356aa)
ABC transporter related protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q123I6_POLSJ rbh
Spermidine/putrescine ABC transporter ATPase {ECO:0000313|EMBL:KJF65746.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
ABC transporter-like protein rbh
S12_scaffold_378_curated_21
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23432..24304
DNA (873bp) protein (291aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q123I7_POLSJ rbh
binding-protein-dependent transport system inner membrane protein rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABE46305.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
S12_scaffold_378_curated_22
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24301..25110
DNA (810bp) protein (270aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q123I8_POLSJ rbh
ABC transporter permease {ECO:0000313|EMBL:KJF65744.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
binding-protein-dependent transport system inner membrane protein rbh
S12_scaffold_378_curated_23
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25208..26344
DNA (1137bp) protein (379aa)
FAD dependent oxidoreductase n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0DYY7_PSEDT rbh
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KJF65743.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
FAD dependent oxidoreductase rbh
S12_scaffold_378_curated_24
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26334..26666
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0DYY6_PSEDT
Uncharacterized protein {ECO:0000313|EMBL:EGC00621.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
NAD(FAD)-dependent dehydrogenase
S12_scaffold_378_curated_25
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26663..28027
DNA (1365bp) protein (455aa)
BFD-like (2Fe-2S)-binding region n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0DYY5_PSEDT rbh
(2Fe-2S)-binding protein {ECO:0000313|EMBL:KJF65741.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
BFD-like protein rbh
S12_scaffold_378_curated_26
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28063..28422
DNA (360bp) protein (120aa)
Endoribonuclease L-PSP n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0DYY4_PSEDT
Cytochrome C2 {ECO:0000313|EMBL:KJF65740.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
endoribonuclease L-PSP
S12_scaffold_378_curated_27
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28453..29574
DNA (1122bp) protein (374aa)
galactonate dehydratase (EC:4.2.1.6) rbh
Galactonate dehydratase {ECO:0000313|EMBL:ABE46299.1}; EC=4.2.1.6 {ECO:0000313|EMBL:ABE46299.1};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Galactonate dehydratase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q123J3_POLSJ rbh
S12_scaffold_378_curated_28
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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29773..30459
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A8K5_STAND rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADH90539.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_378_curated_29
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30548..30862
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V5V8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN88536.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
S12_scaffold_378_curated_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(30993..31160)
DNA (168bp) protein (56aa)
50S ribosomal protein L33 n=5 Tax=Bartonella RepID=N6VMM0_9RHIZ
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
50S ribosomal protein L33
Displaying items 1-30 of 50 in total

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