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S12_scaffold_192_curated

Search features with annotation key words

Displaying items 1-30 of 122 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_192_curated_1
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(297..1163)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DJX2_BRAJP
LysR family transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:BAL11182.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
S12_scaffold_192_curated_2
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1368..3209
DNA (1842bp) protein (614aa)
Dihydroxy-acid dehydratase {ECO:0000255|HAMAP-Rule:MF_00012}; Short=DAD {ECO:0000255|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000255|HAMAP-Rule:MF_00012};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
dihydroxy-acid dehydratase (EC:4.2.1.9) rbh
dihydroxy-acid dehydratase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036A7E64 rbh
S12_scaffold_192_curated_3
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3401..4507
DNA (1107bp) protein (369aa)
UPI0003CE1FFE related cluster n=1 Tax=unknown RepID=UPI0003CE1FFE rbh
Membrane protein {ECO:0000313|EMBL:ESY66592.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
HPP family protein rbh
S12_scaffold_192_curated_4
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4577..5512
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000308CD50
Bradyrhizobium elkanii strain UASWS1015 Contig175, whole genome shotgun sequence {ECO:0000313|EMBL:KIU49004.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
S12_scaffold_192_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5572..6054)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EB04_BRASB
Uncharacterized protein {ECO:0000313|EMBL:KFC61574.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
S12_scaffold_192_curated_6
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6290..6733
DNA (444bp) protein (148aa)
Transcriptional regulator, AsnC family n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EBE8_BRASB
AsnC family transcriptional regulator
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABQ33492.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
S12_scaffold_192_curated_7
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6915..8042
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EBF0_BRASB rbh
Saccharopine dehydrogenase {ECO:0000313|EMBL:KJC51281.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein rbh
S12_scaffold_192_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8076..8690)
DNA (615bp) protein (205aa)
Haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED n=1 Tax=Microvirga sp. WSM3557 RepID=I4YTY0_9RHIZ
Haloacid dehalogenase-like hydrolase {ECO:0000313|EMBL:KFC72938.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
haloacid dehalogenase
S12_scaffold_192_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8789..9697
DNA (909bp) protein (303aa)
Ferric reductase domain-containing protein n=1 Tax=Methylobacterium sp. GXF4 RepID=I9X0S7_9RHIZ
Flavocytochrome YedZ {ECO:0000313|EMBL:KFC72939.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Ferric reductase domain-containing protein
S12_scaffold_192_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9777..11507
DNA (1731bp) protein (577aa)
Arabinose efflux permease family protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YS10_9RHIZ rbh
MFS permease {ECO:0000313|EMBL:KFC72940.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
putative MFS permease rbh
S12_scaffold_192_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11518..12315)
DNA (798bp) protein (266aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Undecaprenyl-diphosphatase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YTX0_9RHIZ rbh
putative undecaprenol kinase rbh
S12_scaffold_192_curated_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12573..13265
DNA (693bp) protein (231aa)
Glutathione S-transferase domain n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UFD3_METS4 rbh
Glutathione S-transferase domain protein {ECO:0000313|EMBL:KFC66943.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
glutathione S-transferase domain-containing protein rbh
S12_scaffold_192_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13325..14401
DNA (1077bp) protein (359aa)
Epoxyqueuosine reductase {ECO:0000313|EMBL:KFC66944.1}; EC=1.1.-.- {ECO:0000313|EMBL:KFC66944.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000314D89B rbh
hypothetical protein rbh
S12_scaffold_192_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14398..15264
DNA (867bp) protein (289aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4TIZ4_9RHIZ rbh
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:KFC66945.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
NAD-dependent epimerase/dehydratase rbh
S12_scaffold_192_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15265..16116)
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI00035FAA48 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFC66946.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein rbh
S12_scaffold_192_curated_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16318..18411)
DNA (2094bp) protein (698aa)
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:KFC66947.1}; EC=2.7.3.- {ECO:0000313|EMBL:KFC66947.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D385A0 rbh
PAS/PAC sensor hybrid histidine kinase rbh
S12_scaffold_192_curated_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18505..20043)
DNA (1539bp) protein (513aa)
ATPase AAA n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030839E3 rbh
Mg chelatase-related protein {ECO:0000313|EMBL:KFC66948.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
chlI; Mg chelatase, subunit ChlI
S12_scaffold_192_curated_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20340..20642)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F22340
Uncharacterized protein {ECO:0000313|EMBL:KFC66951.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
S12_scaffold_192_curated_trna_1
unknown

Not on your lists

20841..20927
DNA (87bp)
transferRNA Ser
S12_scaffold_192_curated_19
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21103..22332
DNA (1230bp) protein (410aa)
Phage integrase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLT5_NITHX rbh
integrase
Phage integrase {ECO:0000313|EMBL:ABE62812.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
S12_scaffold_192_curated_20
Erwinia mallotivora, Erwinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22327..22512)
DNA (186bp) protein (62aa)
Uncharacterized protein n=2 Tax=Salmonella enterica I RepID=V1XAF3_SALET
Transcriptional regulator {ECO:0000313|EMBL:EXU75351.1}; TaxID=69222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Erwinia.;" source="Erwinia mallotivora.;"
DNA binding protein
S12_scaffold_192_curated_21
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22524..22916)
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037D0D46
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
S12_scaffold_192_curated_22
unknown

Not on your lists

comp(22913..23128)
DNA (216bp) protein (72aa)

This feature has no annotations

S12_scaffold_192_curated_23
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23125..23607)
DNA (483bp) protein (161aa)
Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KCB2_METEX
Putative uncharacterized protein {ECO:0000313|EMBL:EHP94929.1}; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
S12_scaffold_192_curated_24
unknown

Not on your lists

comp(23604..23753)
DNA (150bp) protein (50aa)

This feature has no annotations

S12_scaffold_192_curated_25
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23750..24217)
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI0003757922
tRNA/rRNA methyltransferase {ECO:0000313|EMBL:EEE06885.1}; TaxID=513052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CGD2.;"
tRNA/rRNA methyltransferase SpoU
S12_scaffold_192_curated_26
unknown

Not on your lists

comp(24221..24346)
DNA (126bp) protein (42aa)

This feature has no annotations

S12_scaffold_192_curated_27
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24343..24744)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YP11_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM25703.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
HNH nuclease
S12_scaffold_192_curated_28

Not on your lists

comp(24744..25193)
DNA (450bp) protein (150aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CJN7_VARPS
Uncharacterized protein {ECO:0000313|EMBL:KKM19360.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
S12_scaffold_192_curated_29
Synechococcus sp. RS9917, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(25190..25903)
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Synechococcus sp. CB0101 RepID=UPI00020012CD
Uncharacterized protein {ECO:0000313|EMBL:EAQ67954.1}; TaxID=221360 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. RS9917.;"
hypothetical protein
Displaying items 1-30 of 122 in total

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