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S12_scaffold_354_curated

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_354_curated_1
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

257..682
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K5J9_9SPHN
ArsR family transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
S12_scaffold_354_curated_2
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

679..1152
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0KET7_9SPHN
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
S12_scaffold_354_curated_3
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1149..1802
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J532_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB31942.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
glutathione S-transferase rbh
S12_scaffold_354_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1927..3399)
DNA (1473bp) protein (491aa)
UPF0061 protein MicloDRAFT_00008900 n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z298_9RHIZ rbh
UPF0061 protein FG93_02799 {ECO:0000256|HAMAP-Rule:MF_00692}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein rbh
S12_scaffold_354_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3598..4845
DNA (1248bp) protein (416aa)
Salicylate hydroxylase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HK68_9BRAD rbh
Salicylate hydroxylase {ECO:0000313|EMBL:KFC64128.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
FAD-dependent monooxygenase rbh
S12_scaffold_354_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4961..5419)
DNA (459bp) protein (153aa)
cupin n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037F063A
Cupin domain-containing protein {ECO:0000313|EMBL:KFC64125.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
cupin
S12_scaffold_354_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5478..6176)
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00035D319E rbh
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:KFC64124.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter-like protein rbh
S12_scaffold_354_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6179..6928)
DNA (750bp) protein (250aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YW25_9RHIZ rbh
Branched-chain amino acid transport system ATP-binding protein {ECO:0000313|EMBL:KFC64123.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter related
S12_scaffold_354_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6921..7916)
DNA (996bp) protein (332aa)
Branched-chain amino acid transport system permease protein LivM n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RLB0_9RHIZ rbh
Branched-chain amino acid transport system permease {ECO:0000313|EMBL:KFC64122.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
inner-membrane translocator rbh
S12_scaffold_354_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7919..8845)
DNA (927bp) protein (309aa)
ABC transporter permease protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TRP2_9PROT rbh
Putative branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:KFC64121.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter permease rbh
S12_scaffold_354_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8963..10135)
DNA (1173bp) protein (391aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QQQ5_9BRAD rbh
Putative ABC transporter substrate binding protein {ECO:0000313|EMBL:KFC64120.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein rbh
S12_scaffold_354_curated_12
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10378..11331
DNA (954bp) protein (318aa)
PfkB domain protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7II15_XANP2 rbh
ribokinase-like domain-containing protein rbh
PfkB domain protein {ECO:0000313|EMBL:ABS67658.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
S12_scaffold_354_curated_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11381..12289)
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PIF2_9BRAD rbh
Multidrug DMT transporter permease {ECO:0000313|EMBL:KIZ42876.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein rbh
S12_scaffold_354_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12301..13458)
DNA (1158bp) protein (386aa)
Cys/Met metabolism pyridoxal-phosphate-dependent protein (EC:2.5.1.48) rbh
Cystathionine beta-lyase/cystathionine gamma-synthase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z042_9RHIZ rbh
O-succinylhomoserine (Thiol)-lyase {ECO:0000313|EMBL:KFC73152.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
S12_scaffold_354_curated_15
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13587..14048
DNA (462bp) protein (154aa)
Transcriptional regulator, AsnC family n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A410_9PROT
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:EHL98637.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
AsnC family transcriptional regulator
S12_scaffold_354_curated_16
bacterium YEK0313, Bacteria

Not on your lists

14167..15330
DNA (1164bp) protein (388aa)
mannose-6-phosphate isomerase n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003B591DF
Cellobiose 2-epimerase {ECO:0000313|EMBL:CEJ14922.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
N-acylglucosamine 2-epimerase
S12_scaffold_354_curated_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15327..16310)
DNA (984bp) protein (328aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YR45_9RHIZ rbh
Oligopeptide/dipeptide ABC transporter, ATP-binding-like protein {ECO:0000313|EMBL:KFC74763.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
oligopeptide ABC transporter rbh
S12_scaffold_354_curated_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16307..17287)
DNA (981bp) protein (327aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YR44_9RHIZ rbh
Oligopeptide/dipeptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:KFC74762.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
oligopeptide ABC transporter rbh
S12_scaffold_354_curated_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17284..18828)
DNA (1545bp) protein (515aa)
Putative gamma-glutamyltranspeptidase {ECO:0000313|EMBL:KFC74761.1}; EC=2.3.2.2 {ECO:0000313|EMBL:KFC74761.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Gamma-glutamyltransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YR43_9RHIZ rbh
ggt; gamma-glutamyltransferase rbh
S12_scaffold_354_curated_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18828..19724)
DNA (897bp) protein (299aa)
Putative xylanase/chitin deacetylase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YR42_9RHIZ rbh
Putative xylanase/chitin deacetylase {ECO:0000313|EMBL:KFC74760.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
polysaccharide deacetylase rbh
S12_scaffold_354_curated_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19738..20523)
DNA (786bp) protein (262aa)
5-keto-D-gluconate-5-reductase {ECO:0000313|EMBL:KFC74759.1}; EC=1.1.1.69 {ECO:0000313|EMBL:KFC74759.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YR41_9RHIZ rbh
oxidoreductase
S12_scaffold_354_curated_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20535..21392)
DNA (858bp) protein (286aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YR40_9RHIZ rbh
Peptide transport system permease DppC {ECO:0000313|EMBL:KFC74758.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
dppCch1; dipeptide ABC transporter rbh
S12_scaffold_354_curated_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21389..22315)
DNA (927bp) protein (309aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YR39_9RHIZ rbh
Inner membrane ABC transporter permease protein YddR {ECO:0000313|EMBL:KFC74757.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
peptide ABC transporter rbh
S12_scaffold_354_curated_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22322..23827)
DNA (1506bp) protein (502aa)
ABC-type dipeptide transport system, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YR38_9RHIZ rbh
Oligopeptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFC74756.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
dipeptide ABC transporter rbh
S12_scaffold_354_curated_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23824..24603)
DNA (780bp) protein (260aa)
Transcriptional regulator, GntR family n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4TBI9_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:KFC74755.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
transcriptional regulator
S12_scaffold_354_curated_26
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24756..25955)
DNA (1200bp) protein (400aa)
Major facilitator superfamily MFS_1 n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IF72_METNO rbh
major facilitator superfamily protein rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACL55783.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
S12_scaffold_354_curated_27
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26048..26800
DNA (753bp) protein (251aa)
AraC family transcriptional regulator n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00034AB1C3 rbh
AraC family transcriptional regulator {ECO:0000313|EMBL:GAN47444.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
AraC family transcriptional regulator rbh
S12_scaffold_354_curated_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26811..27692)
DNA (882bp) protein (294aa)
ABC transporter permease n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8ACU5_RHIRD rbh
Oligopeptide ABC transporter permease {ECO:0000313|EMBL:KFC72784.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
accE; ABC transporter permease rbh
S12_scaffold_354_curated_29
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27694..28626)
DNA (933bp) protein (311aa)
Binding-protein-dependent transport system inner membrane protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NYL2_9RHIZ rbh
ABC-type dipeptide/oligopeptide/nickel transport system, permease component
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
S12_scaffold_354_curated_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28626..29351)
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000302AD78
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:KFC72782.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
Displaying items 1-30 of 53 in total

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