ggKbase home page

S12_scaffold_116_curated

Search features with annotation key words

Displaying items 1-30 of 118 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_116_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..368
DNA (366bp) protein (122aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Anhydro-N-acetylmuramic acid kinase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YM26_9RHIZ
anmK; anhydro-N-acetylmuramic acid kinase
S12_scaffold_116_curated_2
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(504..1643)
DNA (1140bp) protein (380aa)
Transcriptional regulator, LuxR family n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EQ47_BRASB
LuxR family transcriptional regulator
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:ABQ38291.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
S12_scaffold_116_curated_3
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1764..2705)
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00037CB18E rbh
ribokinase
Ribokinase {ECO:0000313|EMBL:BAI74907.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
S12_scaffold_116_curated_4
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2765..3535
DNA (771bp) protein (257aa)
Transcriptional regulator n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P286_AZOS1 rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:KFG67924.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
transcriptional regulator rbh
S12_scaffold_116_curated_5
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3723..4331
DNA (609bp) protein (203aa)
regulatory protein LuxR n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489B98
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:EJN07598.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
transcriptional regulatory protein LuxR family
S12_scaffold_116_curated_6
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4445..5239
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003706052
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB75000.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
S12_scaffold_116_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5363..6931
DNA (1569bp) protein (523aa)
Extracellular solute-binding protein, family 5 n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IZK1_RHOP2 rbh
Extracellular solute-binding protein, family 5 {ECO:0000313|EMBL:KFC73889.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
extracellular solute-binding protein rbh
S12_scaffold_116_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7097..8074
DNA (978bp) protein (326aa)
Oligopeptide ABC transporter n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TH72_TISMK rbh
Putative dipeptide transport system permease protein {ECO:0000313|EMBL:KFC73888.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
appB; oligopeptide ABC transporter rbh
S12_scaffold_116_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8071..8907
DNA (837bp) protein (279aa)
Dipeptide ABC transporter n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JKF8_AGRRK rbh
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:KFC73887.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
dppCch1; dipeptide ABC transporter rbh
S12_scaffold_116_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8904..10511
DNA (1608bp) protein (536aa)
ATPase component of various ABC-type transport systems with duplicated ATPase domain n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKN1_9RHIZ rbh
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:KFC73886.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter-like protein rbh
S12_scaffold_116_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10642..11931
DNA (1290bp) protein (430aa)
acetylornithine deacetylase (EC:3.5.1.16) rbh
Acetylornithine deacetylase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FTM7_ACICJ rbh
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase {ECO:0000313|EMBL:KFC73885.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
S12_scaffold_116_curated_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11928..12812
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D5A741 rbh
DMT superfamily permease {ECO:0000313|EMBL:KFC73884.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
S12_scaffold_116_curated_13
bacterium YEK0313, Bacteria

Not on your lists

12991..13584
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036F0F2F
Ankyrin repeats (3 copies) {ECO:0000313|EMBL:CEJ12234.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ankyrin repeat-containing protein
S12_scaffold_116_curated_14
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13601..14074
DNA (474bp) protein (158aa)
CMP/dCMP deaminase (EC:3.5.4.3)
CMP/dCMP deaminase {ECO:0000313|EMBL:ABF10594.1}; EC=3.5.4.3 {ECO:0000313|EMBL:ABF10594.1};; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
dCMP deaminase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031A1DAA
S12_scaffold_116_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14113..14292)
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ILY3_XANP2
Uncharacterized protein {ECO:0000313|EMBL:KFC74582.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
S12_scaffold_116_curated_16
bacterium YEK0313, Bacteria

Not on your lists

comp(14439..15581)
DNA (1143bp) protein (381aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0003658F4D rbh
Corrinoid ABC transporter substrate-binding protein {ECO:0000313|EMBL:CEJ10288.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
periplasmic binding protein
S12_scaffold_116_curated_17
bacterium YEK0313, Bacteria

Not on your lists

comp(15587..17815)
DNA (2229bp) protein (743aa)
TonB-dependent siderophore receptor n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M941_METRJ rbh
Ferrichrome-iron receptor {ECO:0000313|EMBL:CEJ10287.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
TonB-dependent siderophore receptor rbh
S12_scaffold_116_curated_18
bacterium YEK0313, Bacteria

Not on your lists

17956..18813
DNA (858bp) protein (286aa)
AraC family transcriptional regulator n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00034AB1C3
HTH-type transcriptional repressor of iron proteins A {ECO:0000313|EMBL:CEJ10286.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
AraC family transcriptional regulator
S12_scaffold_116_curated_19
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18862..20304)
DNA (1443bp) protein (481aa)
hydA; dihydropyrimidinase (EC:3.5.2.2)
dihydropyrimidinase n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI00037B1B17 rbh
Dihydropyrimidinase {ECO:0000313|EMBL:ETU84914.1}; TaxID=1402581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PS42.;"
S12_scaffold_116_curated_20
Streptomyces sp. HPH0547, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20311..21090)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Streptomyces sp. HPH0547 RepID=S3B1S1_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EPD93250.1}; TaxID=1203592 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HPH0547.;"
GntR family transcriptional regulator
S12_scaffold_116_curated_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21087..21740)
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031B3D12
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:KFC70104.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC-type amino acid transport system, permease component
S12_scaffold_116_curated_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21746..22417)
DNA (672bp) protein (224aa)
Polar amino acid ABC transporter inner membrane subunit n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0UM62_ALCFA
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:KFC70103.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
amino acid ABC transporter permease
S12_scaffold_116_curated_23
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22420..23181)
DNA (762bp) protein (254aa)
glnQ; glutamine transport ATP-binding protein GlnQ (EC:3.6.3.-)
Putative ABC transporter ATP-binding protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SQV9_9RHOB
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:EAP75518.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius nubinhibens ISM.;"
S12_scaffold_116_curated_24
Alcaligenes sp. EGD-AK7, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23181..24047)
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031A777B
Uncharacterized protein {ECO:0000313|EMBL:ERI33360.1}; TaxID=1386079 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes sp. EGD-AK7.;"
ABC transporter amino acid-binding protein
S12_scaffold_116_curated_25
RBG_16_Armatimonadetes_58_9_curated, Armatimonadetes, Bacteria

Not on your lists

24151..25218
DNA (1068bp) protein (356aa)
NAD/NADP octopine/nopaline dehydrogenase n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67SV1_SYMTH
NAD/NADP octopine/nopaline dehydrogenase
Tax=RBG_16_Armatimonadetes_58_9_curated
S12_scaffold_116_curated_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25309..29508)
DNA (4200bp) protein (1400aa)
Putative outer membrane autotransporter barrel n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G588_9BRAD rbh
Putative serine protease/outer membrane autotransporter {ECO:0000313|EMBL:KFC64869.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein rbh
S12_scaffold_116_curated_27
unknown

Not on your lists

comp(29703..30305)
DNA (603bp) protein (201aa)

This feature has no annotations

S12_scaffold_116_curated_28
bacterium YEK0313, Bacteria

Not on your lists

30583..32028
DNA (1446bp) protein (482aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ATP-binding region ATPase domain protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TEY6_MESCW rbh
ATPase domain-containing protein rbh
S12_scaffold_116_curated_29
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32025..32714
DNA (690bp) protein (230aa)
Response regulator receiver n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TEY7_MESCW rbh
response regulator receiver rbh
Response regulator receiver {ECO:0000313|EMBL:ADV11078.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
S12_scaffold_116_curated_30
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32774..33763)
DNA (990bp) protein (330aa)
Cysteine synthase, chloroplastic/chromoplastic (EC:2.5.1.47) rbh
Cysteine synthase n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3JJS6_9RHIZ rbh
Cysteine synthase {ECO:0000313|EMBL:EMG52528.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
Displaying items 1-30 of 118 in total

View Taxonomy