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S12_scaffold_185_curated

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Displaying items 1-30 of 84 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_185_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..481
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FA3DCA
Glycolate oxidase iron-sulfur subunit {ECO:0000256|PIRNR:PIRNR000139}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
S12_scaffold_185_curated_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


687..2279
DNA (1593bp) protein (531aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hisS; histidyl-tRNA synthetase (EC:6.1.1.21) rbh
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000365DE88 rbh
S12_scaffold_185_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2483..3595
DNA (1113bp) protein (371aa)
ATP phosphoribosyltransferase involved in histidine biosynthesis n=1 Tax=Microvirga sp. WSM3557 RepID=I4YV14_9RHIZ rbh
Suspect SCG annotation. See neighboring gene [S12_scaffold_185_curated_2].
ATP phosphoribosyltransferase regulatory subunit HisZ {ECO:0000313|EMBL:KFC73345.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hisZ; ATP phosphoribosyltransferase regulatory subunit rbh
S12_scaffold_185_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3592..4578
DNA (987bp) protein (329aa)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00079, ECO:0000256|SAAS:SAAS00046302}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_00079};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_00079};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_00079, ECO:0000256|SAAS:SAAS00046302};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ATP phosphoribosyltransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YV13_9RHIZ rbh
hisG; ATP phosphoribosyltransferase rbh
S12_scaffold_185_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4695..5201
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037A7706
META domain protein {ECO:0000313|EMBL:KFC73343.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
S12_scaffold_185_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5313..7406)
DNA (2094bp) protein (698aa)
ABC transporter related n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ER24_METSB rbh
Putative ABC transporter, ATP-binding protein, permease {ECO:0000313|EMBL:KFC73342.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter-like protein rbh
S12_scaffold_185_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7631..8743)
DNA (1113bp) protein (371aa)
amino acid ABC transporter substrate-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037A4F77 rbh
High-affinity leucine-specific transport system, periplasmic binding protein {ECO:0000313|EMBL:KFC74035.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
extracellular ligand-binding receptor rbh
S12_scaffold_185_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8919..9833)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003643305 rbh
Putative PhnD protein, phosphonate ABC transporter, exported protein {ECO:0000313|EMBL:KFC73340.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter, phosphonate, periplasmic substrate-binding protein phnD
S12_scaffold_185_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9975..11612)
DNA (1638bp) protein (546aa)
molecular chaperone GroEL n=1 Tax=Methylocystis parvus RepID=UPI0002F905FB rbh
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
chaperonin GroEL rbh
S12_scaffold_185_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11661..11948)
DNA (288bp) protein (96aa)
molecular chaperone GroES n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030153DE
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
groES; co-chaperonin GroES
S12_scaffold_185_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12177..12632
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036E60A1
Transcriptional regulator, MarR family {ECO:0000313|EMBL:KFC64183.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
MarR family transcriptional regulator
S12_scaffold_185_curated_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12705..13175
DNA (471bp) protein (157aa)
Phenylacetic acid degradation-related protein n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NYS6_GRAMM
RNA polymerase sigma-70 factor, ECF subfamily {ECO:0000313|EMBL:KFC64182.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
phenylacetic acid degradation-related protein
S12_scaffold_185_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13172..14014)
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031C41F0
Uncharacterized protein {ECO:0000313|EMBL:KFC64178.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
S12_scaffold_185_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14011..14502)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00036BA887
Transcriptional regulatory protein {ECO:0000313|EMBL:KFC64177.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
N-acetyltransferase GCN5
S12_scaffold_185_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14719..16149
DNA (1431bp) protein (477aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7CA80_METED rbh
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:KFC64175.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein rbh
S12_scaffold_185_curated_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16319..17137
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI0003720AEE
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:KFC64174.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ErfK/YbiS/YcfS/YnhG family protein
S12_scaffold_185_curated_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17236..18033)
DNA (798bp) protein (266aa)
Putative periplasmic ligand-binding sensor protein n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1LYH1_METRJ
Putative periplasmic ligand-binding sensor protein {ECO:0000313|EMBL:KFC64172.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
putative periplasmic ligand-binding sensor protein
S12_scaffold_185_curated_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18188..18949)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKH0_9RHIZ rbh
ErfK/YbiS/YcfS/YnhG {ECO:0000313|EMBL:KFC64170.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
S12_scaffold_185_curated_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19132..20538)
DNA (1407bp) protein (469aa)
UPI0003CF3463 related cluster n=1 Tax=unknown RepID=UPI0003CF3463 rbh
MATE efflux family protein {ECO:0000313|EMBL:KFC64169.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
MATE efflux family protein rbh
S12_scaffold_185_curated_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20684..21913
DNA (1230bp) protein (410aa)
N-carbamoyl-L-amino acid hydrolase {ECO:0000313|EMBL:KFC64167.1}; EC=3.5.1.87 {ECO:0000313|EMBL:KFC64167.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Beta-ureidopropionase n=1 Tax=Rhodovulum sp. PH10 RepID=J6J2F0_9RHOB rbh
hydantoinase/carbamoylase family amidase rbh
S12_scaffold_185_curated_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21925..23337
DNA (1413bp) protein (471aa)
Amidotransferase (Amidase) {ECO:0000313|EMBL:KFC64166.1}; EC=3.5.1.4 {ECO:0000313|EMBL:KFC64166.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
amidase (EC:3.5.1.4) rbh
Amidase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8I9K9_METNO rbh
S12_scaffold_185_curated_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23551..25146
DNA (1596bp) protein (532aa)
Putative ABC transporter periplasmic-binding protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ELS5_BRASB rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFC64165.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter substrate-binding protein rbh
S12_scaffold_185_curated_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25279..26220
DNA (942bp) protein (314aa)
ABC transporter, permease protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RQM3_9PROT rbh
Putative ABC transporter permease protein {ECO:0000313|EMBL:KFC64164.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
putative ABC transporter permease protein rbh
S12_scaffold_185_curated_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26217..27113
DNA (897bp) protein (299aa)
Binding-protein-dependent transport system inner membrane protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y2Z3_9RHIZ rbh
Putative ABC transporter permease protein oligopeptide/dipeptide ABC transporter {ECO:0000313|EMBL:KFC64163.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
binding-protein-dependent transport system inner membrane protein rbh
S12_scaffold_185_curated_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27227..28162
DNA (936bp) protein (312aa)
N-carbamyl-D-amino acid amidohydrolase n=1 Tax=Thauera sp. 28 RepID=N6YKU2_9RHOO rbh
N-carbamyl-D-amino acid amidohydrolase {ECO:0000313|EMBL:KFC64162.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
N-carbamyl-D-amino acid amidohydrolase rbh
S12_scaffold_185_curated_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28184..29347
DNA (1164bp) protein (388aa)
Amidohydrolase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I3F1_AZOC5 rbh
Putative amidohydrolase {ECO:0000313|EMBL:KFC64161.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
dihydroorotase rbh
S12_scaffold_185_curated_27
bacterium YEK0313, Bacteria

Not on your lists

29354..29863
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJ62_9BRAD
Acetyltransferase (GNAT) family protein {ECO:0000313|EMBL:CEJ11300.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
acetyltransferase
S12_scaffold_185_curated_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29911..30369
DNA (459bp) protein (153aa)
Endoribonuclease L-PSP n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0U9J5_METS4
Putative endoribonuclease L-PSP {ECO:0000313|EMBL:KFC64160.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
endoribonuclease L-PSP
S12_scaffold_185_curated_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30366..31487
DNA (1122bp) protein (374aa)
Putative amino acid processing enzyme-related protein (Aldolase or racemase) n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TJJ7_9BRAD rbh
Putative amino acid processing enzyme-related protein (Aldolase or racemase) {ECO:0000313|EMBL:KFC64159.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
amino acid processing enzyme-like protein rbh
S12_scaffold_185_curated_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31489..32079)
DNA (591bp) protein (197aa)
type VI secretion protein Vgr n=1 Tax=Variovorax paradoxus RepID=UPI00037CD835
putative type VI secretion system protein, Vgr family
Putative type VI secretion system protein, Vgr family {ECO:0000313|EMBL:AGU47743.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Displaying items 1-30 of 84 in total

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