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S12_scaffold_221_curated

Search features with annotation key words

Displaying items 1-30 of 107 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_221_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(595..1665)
DNA (1071bp) protein (357aa)
Putative thc operon regulatory protein ThcR n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X286_RHIFR
Transcriptional regulatory protein AraC family protein {ECO:0000313|EMBL:KFC64944.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
thcR2; thc operon regulatory protein ThcR
S12_scaffold_221_curated_2
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2644..3627
DNA (984bp) protein (328aa)
Transcriptional regulator, CadC n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V3V1_9RHIZ
Transcriptional regulator, CadC {ECO:0000313|EMBL:ENN88535.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
adenylate cyclase
S12_scaffold_221_curated_3
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3748..4716
DNA (969bp) protein (323aa)
Alcohol dehydrogenase {ECO:0000313|EMBL:EWS59145.1}; EC=1.1.1.1 {ECO:0000313|EMBL:EWS59145.1};; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
NADPH:quinone oxidoreductase (EC:1.6.5.5) rbh
Putative NADPH:quinone oxidoreductase protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SE72_METPP rbh
S12_scaffold_221_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5168..6346)
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PD23_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:KFC63443.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
low temperature requirement A rbh
S12_scaffold_221_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6421..8013)
DNA (1593bp) protein (531aa)
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3) rbh
IMP cyclohydrolase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F4C642 rbh
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
S12_scaffold_221_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8115..9833)
DNA (1719bp) protein (573aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E142B8 rbh
Heparinase II/III family protein {ECO:0000313|EMBL:KFC63441.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
heparinase II/III family protein rbh
S12_scaffold_221_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9918..11240)
DNA (1323bp) protein (441aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000313|EMBL:KFC63440.1}; EC=2.1.1.- {ECO:0000313|EMBL:KFC63440.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Sun protein n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7QR83_METSZ rbh
sun protein rbh
S12_scaffold_221_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11284..12213)
DNA (930bp) protein (310aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein, partial n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000363D2E8 rbh
peptidase family M48 rbh
S12_scaffold_221_curated_9
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12330..12551
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UJW0_METS4
Methylobacterium aquaticum plasmid pMaq22A_1p DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ48678.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
hypothetical protein
S12_scaffold_221_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12637..13941
DNA (1305bp) protein (435aa)
Putative enzyme {ECO:0000313|EMBL:KFC63437.1}; EC=2.1.1.- {ECO:0000313|EMBL:KFC63437.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Methyltransferase, cyclopropane fatty acid synthase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMM9_9RHIZ rbh
cyclopropane-fatty-acyl-phospholipid synthase rbh
S12_scaffold_221_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14025..14342)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00035F1E77
Uncharacterized protein {ECO:0000313|EMBL:KFC63436.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
S12_scaffold_221_curated_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14584..15531
DNA (948bp) protein (316aa)
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:KFC63435.1}; EC=1.1.1.95 {ECO:0000313|EMBL:KFC63435.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Glyoxylate reductase (EC:1.1.1.26)
hydroxyacid dehydrogenase n=1 Tax=Pseudomonas sp. 313 RepID=UPI0003151ABA rbh
S12_scaffold_221_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15536..16048)
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000371B4CA
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:KFC63434.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ErfK/YbiS/YcfS/YnhG family protein
S12_scaffold_221_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16159..16983)
DNA (825bp) protein (275aa)
Hemin import ATP-binding protein HmuV {ECO:0000256|HAMAP-Rule:MF_01718, ECO:0000256|SAAS:SAAS00041307}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01718, ECO:0000256|SAAS:SAAS00041330};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI000363F8BA
ABC transporter-like protein
S12_scaffold_221_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16976..18082)
DNA (1107bp) protein (369aa)
Transport system permease protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QLM0_METTR rbh
HmuU protein {ECO:0000313|EMBL:KFC63430.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
transport system permease rbh
S12_scaffold_221_curated_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18079..19038)
DNA (960bp) protein (320aa)
Periplasmic binding protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QLM1_METTR
Periplasmic hemin-binding protein {ECO:0000313|EMBL:KFC63429.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
periplasmic binding protein
S12_scaffold_221_curated_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19399..19746
DNA (348bp) protein (116aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QLM5_METTR
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:KFC63427.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
antibiotic biosynthesis monooxygenase
S12_scaffold_221_curated_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19757..20278
DNA (522bp) protein (174aa)
Putative heme utilization carrier protein HutX n=1 Tax=Rhizobium sp. CF080 RepID=J3CJI0_9RHIZ
Coproporphyrinogen III oxidase {ECO:0000313|EMBL:KFC63426.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
huvX; Heme utilization protein HuvX
S12_scaffold_221_curated_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20419..21876
DNA (1458bp) protein (486aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC63417.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
S12_scaffold_221_curated_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21880..22602)
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FE36B6 rbh
Protein tyrosine/serine phosphatase {ECO:0000313|EMBL:KFC63416.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
protein tyrosine/serine phosphatase rbh
S12_scaffold_221_curated_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22769..23305
DNA (537bp) protein (179aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Inorganic pyrophosphatase n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XTJ6_RHIRD
inorganic pyrophosphatase
S12_scaffold_221_curated_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23461..24336)
DNA (876bp) protein (292aa)
Putative citrate lyase beta chain protein CitE {ECO:0000313|EMBL:KFC63414.1}; EC=4.1.3.34 {ECO:0000313|EMBL:KFC63414.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
citryl-CoA lyase (EC:4.1.3.34) rbh
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E09225 rbh
S12_scaffold_221_curated_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24428..26140
DNA (1713bp) protein (571aa)
Threonine dehydratase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZH3_9RHIZ rbh
Threonine dehydratase {ECO:0000313|EMBL:KFC63413.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
pyridoxal-5'-phosphate-dependent protein subunit beta rbh
S12_scaffold_221_curated_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26215..27276
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003759F3A rbh
MaoC-like dehydratase {ECO:0000313|EMBL:KFC63412.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
MaoC domain-containing protein dehydratase rbh
S12_scaffold_221_curated_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27433..27828
DNA (396bp) protein (132aa)
Succinate dehydrogenase, cytochrome b556 subunit n=1 Tax=Microvirga sp. WSM3557 RepID=I4YML7_9RHIZ
Succinate dehydrogenase, cytochrome b556 subunit {ECO:0000313|EMBL:KFC63411.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
succinate dehydrogenase, cytochrome b556 subunit
S12_scaffold_221_curated_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27840..28232
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031D7638
Succinate dehydrogenase, hydrophobic membrane anchor protein {ECO:0000313|EMBL:KFC63410.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
succinate dehydrogenase, hydrophobic membrane anchor protein
S12_scaffold_221_curated_27
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28237..30069
DNA (1833bp) protein (611aa)
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.5.1) rbh
succinate dehydrogenase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000305D55F rbh
S12_scaffold_221_curated_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30079..30864
DNA (786bp) protein (262aa)
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
succinate dehydrogenase and fumarate reductase iron-sulfur protein (EC:1.3.5.1) rbh
succinate dehydrogenase iron-sulfur subunit n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031F2311 rbh
S12_scaffold_221_curated_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31071..32312)
DNA (1242bp) protein (414aa)
Putative D-amino-acid dehydrogenase, FAD dependent {ECO:0000313|EMBL:KFC63407.1}; EC=1.4.99.1 {ECO:0000313|EMBL:KFC63407.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036D7B20 rbh
putative D-amino-acid dehydrogenase, FAD dependent rbh
S12_scaffold_221_curated_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32309..33169)
DNA (861bp) protein (287aa)
GMP synthase family protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMS2_9RHIZ rbh
Putative glutamine amidotransferase class-I {ECO:0000313|EMBL:KFC63406.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
glutamine amidotransferase rbh
Displaying items 1-30 of 107 in total

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