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S12_scaffold_448_curated

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_448_curated_1
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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12..413
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I1I3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ETA79728.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fragilis 232.1.;"
S12_scaffold_448_curated_2
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(436..1596)
DNA (1161bp) protein (387aa)
Transporter, major facilitator family protein n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SKK0_9FIRM rbh
Transporter, major facilitator family protein {ECO:0000313|EMBL:EFP61749.1}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
major facilitator superfamily transporter
S12_scaffold_448_curated_3
Erysipelothrix rhusiopathiae, Erysipelothrix, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(1611..2150)
DNA (540bp) protein (180aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=650150 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelothrix.;" source="Erysipelothrix rhusiopathiae (strain Fujisawa).;"
5-formyltetrahydrofolate cyclo-ligase n=2 Tax=Erysipelothrix rhusiopathiae RepID=F5WS26_ERYRF
5-formyltetrahydrofolate cyclo-ligase
S12_scaffold_448_curated_4
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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comp(2150..3553)
DNA (1404bp) protein (468aa)
Putative uncharacterized protein id=2040538 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
Iron-regulated ABC transporter membrane component SufB rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_448_curated_5
[Eubacterium] dolichum, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(3546..3989)
DNA (444bp) protein (148aa)
SUF system FeS assembly protein, NifU family n=2 Tax=Firmicutes RepID=A8R7N9_9FIRM
SUF system FeS assembly protein, NifU family {ECO:0000313|EMBL:EDP12385.1}; TaxID=428127 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="[Eubacterium] dolichum DSM 3991.;"
SUF system FeS assembly protein, NifU family
S12_scaffold_448_curated_6
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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comp(4001..5233)
DNA (1233bp) protein (411aa)
Cysteine desulfurase id=2040544 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
sufS; cysteine desulfurase rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_448_curated_7
Erysipelothrix rhusiopathiae, Erysipelothrix, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(5221..6048)
DNA (828bp) protein (276aa)
Putative SUF system FeS cluster assembly protein SufD n=1 Tax=Erysipelothrix rhusiopathiae (strain Fujisawa) RepID=F5WS22_ERYRF
putative SUF system FeS cluster assembly protein SufD
Putative SUF system FeS cluster assembly protein SufD {ECO:0000313|EMBL:BAK31554.1}; TaxID=650150 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelothrix.;" source="Erysipelothrix rhusiopathiae (strain Fujisawa).;"
S12_scaffold_448_curated_8
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(6041..6877)
DNA (837bp) protein (279aa)
UPI0002F99382 related cluster n=1 Tax=unknown RepID=UPI0002F99382 rbh
Fe-S cluster assembly ATP-binding protein rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_448_curated_9
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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7142..8122
DNA (981bp) protein (327aa)
PPIC-type PPIASE domain protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7E6_9FIRM rbh
PPIC-type PPIASE domain protein {ECO:0000313|EMBL:EEF68104.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
peptidyl-prolyl isomerase
S12_scaffold_448_curated_10
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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8124..8981
DNA (858bp) protein (286aa)
Putative uncharacterized protein id=3462827 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
putative peptidylprolyl isomerase
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_448_curated_11
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9010..11196)
DNA (2187bp) protein (729aa)
Diguanylate cyclase n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TUF0_ALKMQ rbh
diguanylate cyclase rbh
Diguanylate cyclase {ECO:0000313|EMBL:ABR49818.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
S12_scaffold_448_curated_12
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

11309..11704
DNA (396bp) protein (132aa)
UPI0002E96B32 related cluster n=1 Tax=unknown RepID=UPI0002E96B32
Histidine triad domain protein {ECO:0000313|EMBL:EEF68101.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Histidine triad (HIT) nucleotide-binding protein
S12_scaffold_448_curated_13
RIFOXYB2_FULL_Tenericutes_36_25_curated, Tenericutes, Bacteria

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11877..12926
DNA (1050bp) protein (350aa)
id=2424858 bin=GWF1_Tenericute_35_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Tenericute_35_14 organism_group=Tenericutes rbh
Tax=RIFOXYB2_FULL_Tenericutes_36_25_curated
S12_scaffold_448_curated_14
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13016..13357
DNA (342bp) protein (114aa)
Transcriptional regulator, PadR family n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NHS9_CLOSV
Transcriptional regulator, PadR family {ECO:0000313|EMBL:EDS05677.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
lineage-specific thermal regulator protein
S12_scaffold_448_curated_15
Bacillus selenatarsenatis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13359..14354
DNA (996bp) protein (332aa)
hypothetical protein n=1 Tax=Bacillus sp. AP8 RepID=UPI0002ECDCC5
Uncharacterized protein {ECO:0000313|EMBL:GAM16697.1}; TaxID=1321606 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus selenatarsenatis SF-1.;"
hypothetical protein
S12_scaffold_448_curated_16
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(14377..15312)
DNA (936bp) protein (312aa)
Putative uncharacterized protein id=2040560 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
yhaM; 3'-5' exoribonuclease YhaM rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_448_curated_17
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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comp(15290..17293)
DNA (2004bp) protein (668aa)
Regulatory protein RecX id=2040562 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
bifunctional group 1 glycosyl transferase/recombination regulator RecX rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_448_curated_18
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(17306..18334)
DNA (1029bp) protein (343aa)
Gram-positive signal peptide protein, YSIRK family n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7B9_9FIRM rbh
Gram-positive signal peptide protein, YSIRK family {ECO:0000313|EMBL:EEF68127.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
hypothetical protein
S12_scaffold_448_curated_19
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(18513..22022)
DNA (3510bp) protein (1170aa)
Pyruvate-flavodoxin oxidoreductase id=3462675 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
pyruvate:ferredoxin (flavodoxin) oxidoreductase rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_448_curated_20
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(22101..23501)
DNA (1401bp) protein (467aa)
Putative uncharacterized protein id=2040569 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
putative efflux protein, MATE family rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_448_curated_21
Acetobacterium woodii, Acetobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23572..24369)
DNA (798bp) protein (266aa)
glpQ2; glycerophosphoryl diester phosphodiesterase (EC:3.1.4.46)
Glycerophosphoryl diester phosphodiesterase GlpQ2 {ECO:0000313|EMBL:AFA47195.1}; EC=3.1.4.46 {ECO:0000313|EMBL:AFA47195.1};; TaxID=931626 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Acetobacterium.;" source="Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC; 1655).;"
Glycerophosphoryl diester phosphodiesterase GlpQ2 n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LHL6_ACEWD
S12_scaffold_448_curated_22
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

24469..25323
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Clostridiaceae bacterium JC13 RepID=UPI0002EA9FB6 rbh
Uncharacterized protein {ECO:0000313|EMBL:EEF68605.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
hypothetical protein rbh
S12_scaffold_448_curated_23
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(25355..25816)
DNA (462bp) protein (154aa)
Uncharacterized protein id=2188875 bin=GWE2_Firmicute_51_13 species=Desulfosporosinus meridiei genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
hypothetical protein
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_448_curated_24
unknown

Not on your lists

comp(25826..26104)
DNA (279bp) protein (93aa)

This feature has no annotations

S12_scaffold_448_curated_25
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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26238..26942
DNA (705bp) protein (235aa)
two-component system response regulator id=2188877 bin=GWE2_Firmicute_51_13 species=Epulopiscium sp. 'N.t. morphotype B' genus=Epulopiscium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_448_curated_26
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

26923..28299
DNA (1377bp) protein (459aa)
Signal transduction histidine kinase id=2188878 bin=GWE2_Firmicute_51_13 species=Desulfosporosinus meridiei genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
signal transduction histidine kinase
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_448_curated_27
[Eubacterium] dolichum, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(28310..29338)
DNA (1029bp) protein (343aa)
M42 glutamyl aminopeptidase n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R8J8_9FIRM rbh
M42 glutamyl aminopeptidase {ECO:0000313|EMBL:EDP12082.1}; TaxID=428127 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="[Eubacterium] dolichum DSM 3991.;"
yhfE; YhfE rbh
S12_scaffold_448_curated_28
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(29331..29864)
DNA (534bp) protein (178aa)
Bifunctional protein PyrR n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7B3_9FIRM
Bifunctional protein PyrR {ECO:0000256|HAMAP-Rule:MF_01219}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
pyrR.2; bifunctional pyrimidine regulatory protein/uracil phosphoribosyltransferase
S12_scaffold_448_curated_29
Desulfitobacterium dehalogenans, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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29994..30278
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 / JW/IU-DC1) RepID=I4A481_DESDJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL98765.1}; Flags: Precursor;; TaxID=756499 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 /; JW/IU-DC1).;"
S12_scaffold_448_curated_trna_1
unknown

Not on your lists

30405..30477
DNA (73bp)
transferRNA Glu
Displaying items 1-30 of 44 in total

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