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S12_scaffold_507_curated

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_507_curated_1
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(74..394)
DNA (321bp) protein (107aa)
Electron transport complex protein RnfB n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y6Z4_9FIRM
Electron transport complex protein RnfB {ECO:0000313|EMBL:EEF68297.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Predicted NADH:ubiquinone oxidoreductase, subunit RnfB
S12_scaffold_507_curated_2
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(569..1144)
DNA (576bp) protein (192aa)
Electron transport complex, RnfABCDGE type, A subunit n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y6Z2_9FIRM
Electron transport complex subunit A {ECO:0000256|HAMAP-Rule:MF_00459}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
electron transport complex, RnfABCDGE type, A subunit
S12_scaffold_507_curated_3
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(1146..1790)
DNA (645bp) protein (215aa)
Electron transport complex, RnfABCDGE type, E subunit n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y6Z1_9FIRM
Electron transport complex subunit E {ECO:0000256|HAMAP-Rule:MF_00478}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
electron transport complex, RnfABCDGE type, E subunit
S12_scaffold_507_curated_4
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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comp(1803..2720)
DNA (918bp) protein (306aa)
Putative uncharacterized protein id=1856038 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
electron transport complex protein
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_507_curated_5
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(2725..4224)
DNA (1500bp) protein (500aa)
Putative uncharacterized protein id=4290961 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
Predicted NADH:ubiquinone oxidoreductase, subunit RnfD rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_507_curated_6
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(4237..5523)
DNA (1287bp) protein (429aa)
Putative uncharacterized protein id=1856042 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
RnfABCDGE type electron transport complex subunit C
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_507_curated_7
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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5769..6863
DNA (1095bp) protein (365aa)
Putative uncharacterized protein id=4290883 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
ApbE family lipoprotein
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_507_curated_8
Acholeplasma sp. CAG:878, Acholeplasma, Acholeplasmatales, Mollicutes, Tenericutes, Bacteria

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6930..8894
DNA (1965bp) protein (655aa)
Arylsulfatase id=1856049 bin=GWE2_Firmicute_51_13 species=unknown genus=Turicibacter taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
Sulfatase {ECO:0000313|EMBL:CCY27625.1}; TaxID=1262686 species="Bacteria; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Acholeplasma; environmental samples.;" source="Acholeplasma sp. CAG:878.;"
sulfatase
S12_scaffold_507_curated_9
Erysipelothrix rhusiopathiae, Erysipelothrix, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(8930..10204)
DNA (1275bp) protein (425aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=525280 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelothrix.;" source="Erysipelothrix rhusiopathiae ATCC 19414.;"
glucose-6-phosphate isomerase n=1 Tax=Erysipelothrix tonsillarum RepID=UPI000382EAB1 rbh
pgi; fused S1 RNA-binding domain and glucose-6-phosphate isomerase rbh
S12_scaffold_507_curated_10
Erysipelothrix rhusiopathiae, Erysipelothrix, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(10197..10559)
DNA (363bp) protein (121aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=525280 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelothrix.;" source="Erysipelothrix rhusiopathiae ATCC 19414.;"
glucose-6-phosphate isomerase n=1 Tax=Erysipelothrix tonsillarum RepID=UPI000382EAB1
pgi; fused S1 RNA-binding domain and glucose-6-phosphate isomerase
S12_scaffold_507_curated_11
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

10646..11101
DNA (456bp) protein (152aa)
Divergent PAP2 family n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y6Y3_9FIRM
Divergent PAP2 family {ECO:0000313|EMBL:EEF68286.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
acid phosphatase/vanadium-dependent haloperoxidase related protein
S12_scaffold_507_curated_12
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

11110..11349
DNA (240bp) protein (80aa)
Fe/S-biogenesis protein NfuA id=1856057 bin=GWE2_Firmicute_51_13 species=Erysipelothrix rhusiopathiae genus=Erysipelothrix taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
NifU-like domain-containing protein
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_507_curated_13
Dehalobacter restrictus, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11371..11775)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Dehalobacter sp. E1 RepID=UPI0003071366
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF09474.1}; TaxID=871738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter restrictus DSM 9455.;"
S12_scaffold_507_curated_14
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(11777..12667)
DNA (891bp) protein (297aa)
Exopolysaccharide biosynthesis protein id=3146050 bin=GWF2_Firmicute_51_9 species=Enterococcus pallens genus=Enterococcus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
exopolysaccharide biosynthesis protein, putative
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_507_curated_15
unknown

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comp(12886..13368)
DNA (483bp) protein (161aa)

This feature has no annotations

S12_scaffold_507_curated_16
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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comp(13480..13815)
DNA (336bp) protein (112aa)
Rubredoxin-type Fe(Cys)4 protein id=4290867 bin=GWF2_Firmicute_51_9 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
rubredoxin-type Fe(Cys)4 protein
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_507_curated_17
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

13995..16067
DNA (2073bp) protein (691aa)
Glutamate--ammonia ligase, catalytic domain protein {ECO:0000313|EMBL:EEF68278.1}; EC=6.3.1.2 {ECO:0000313|EMBL:EEF68278.1};; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Glutamate--ammonia ligase, catalytic domain protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y6X5_9FIRM rbh
glnA; type III glutamine synthetase rbh
S12_scaffold_507_curated_18
Carnobacterium sp. AT7, Carnobacterium, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16132..16362
DNA (231bp) protein (77aa)
copper chaperone n=1 Tax=Bacillus massiliosenegalensis RepID=UPI0002DAE61A
Putative heavy metal-chaperone/transport protein {ECO:0000313|EMBL:EDP68742.1}; TaxID=333990 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Carnobacteriaceae; Carnobacterium.;" source="Carnobacterium sp. AT7.;"
copZ; copper chaperone
S12_scaffold_507_curated_19
BJP_08E140C01_Spirochaeta_53_29, Spirochaeta, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

16359..18191
DNA (1833bp) protein (611aa)
Putative cadmium-transporting ATPase n=1 Tax=Clostridium ultunense Esp RepID=M1ZKG6_9CLOT rbh
copper/silver-translocating P-type ATPase,heavy metal-translocating P-type ATPase, Cd/Co/Hg/Pb/Zn-transporting rbh
Tax=BJP_08E140C01_Spirochaeta_53_29
S12_scaffold_507_curated_20
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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comp(18205..19341)
DNA (1137bp) protein (379aa)
Putative uncharacterized protein id=3676735 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
permease rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_507_curated_21
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(19343..21208)
DNA (1866bp) protein (622aa)
NAD+ synthase {ECO:0000313|EMBL:EEF66592.1}; EC=6.3.1.5 {ECO:0000313|EMBL:EEF66592.1};; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
NAD+ synthase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YBR4_9FIRM rbh
nadE; NAD(+) synthase rbh
S12_scaffold_507_curated_22
unknown

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21319..21966
DNA (648bp) protein (216aa)

This feature has no annotations

S12_scaffold_507_curated_23
unknown

Not on your lists

21966..22841
DNA (876bp) protein (292aa)

This feature has no annotations

S12_scaffold_507_curated_24
Solobacterium moorei, Solobacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(22844..23563)
DNA (720bp) protein (240aa)
RNA methyltransferase, TrmH family, group 3 id=3750519 bin=GWF2_Firmicute_51_9 species=Solobacterium moorei genus=Solobacterium taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
Putative RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:EFW24064.1}; TaxID=706433 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Solobacterium.;" source="Solobacterium moorei F0204.;"
TrmH family RNA methyltransferase
S12_scaffold_507_curated_25
Eubacterium sp. 3_1_31, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23560..24765)
DNA (1206bp) protein (402aa)
Collagenase and related proteases (EC:3.4.-.-) rbh
hypothetical protein n=1 Tax=Clostridiaceae bacterium JC13 RepID=UPI0003041B66 rbh
Uncharacterized protein {ECO:0000313|EMBL:EHO83952.1}; TaxID=457402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 3_1_31.;"
S12_scaffold_507_curated_26
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24762..25640)
DNA (879bp) protein (293aa)
Peptidase U32 family n=1 Tax=Eubacterium dolichum CAG:375 RepID=R7G570_9FIRM
Peptidase U32 family {ECO:0000313|EMBL:CDE22574.1}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
Collagenase and related proteases
S12_scaffold_507_curated_27
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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comp(25655..26980)
DNA (1326bp) protein (442aa)
Major facilitator superfamily transporter id=2137606 bin=GWE2_Firmicute_51_13 species=Gemella morbillorum genus=Gemella taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
MFS transporter
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_507_curated_28
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

27073..28113
DNA (1041bp) protein (347aa)
threonine aldolase (EC:4.1.2.5) rbh
Putative uncharacterized protein id=2137610 bin=GWE2_Firmicute_51_13 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_507_curated_29
Brachyspira hyodysenteriae, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(28110..28475)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) RepID=C0QWZ9_BRAHW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACN84802.1}; TaxID=565034 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira.;" source="Brachyspira hyodysenteriae (strain ATCC 49526 / WA1).;"
S12_scaffold_507_curated_30
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(28475..28963)
DNA (489bp) protein (163aa)
Antioxidant, AhpC/TSA family {ECO:0000313|EMBL:EEF69353.1}; EC=1.11.1.15 {ECO:0000313|EMBL:EEF69353.1};; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Antioxidant, AhpC/TSA family n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y3W2_9FIRM
peroxiredoxin
Displaying items 1-30 of 40 in total

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