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S12_scaffold_1886_curated

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Displaying 19 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_1886_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..573
DNA (573bp) protein (191aa)
Putative 4-hydroxyphenylpyruvate dioxygenase protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HX25_AZOC5
4-hydroxyphenylpyruvate dioxygenase/hemolysin-like protein {ECO:0000313|EMBL:KFC70370.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
4-hydroxyphenylpyruvate dioxygenase
S12_scaffold_1886_curated_2
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

589..1308
DNA (720bp) protein (240aa)
Protocatechuate 3,4-dioxygenase, beta subunit n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SV86_CAUSK rbh
protocatechuate 3,4-dioxygenase subunit beta rbh
Protocatechuate 3,4-dioxygenase, beta subunit {ECO:0000313|EMBL:ABZ72976.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
S12_scaffold_1886_curated_3
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1292..2008
DNA (717bp) protein (239aa)
protocatechuate 3,4-dioxygenase subunit alpha (EC:1.13.11.3) rbh
Protocatechuate 3,4-dioxygenase subunit alpha n=1 Tax=Sphingomonas sp. LH128 RepID=J8V8D2_9SPHN rbh
Protocatechuate 3,4-dioxygenase subunit alpha {ECO:0000313|EMBL:EJU09117.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
S12_scaffold_1886_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2239..3132
DNA (894bp) protein (298aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. AP16 RepID=J2DJK6_9RHIZ rbh
Putative transcriptional regulatory protein, LysR family OprD regulatory protein {ECO:0000313|EMBL:KFC65369.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
transcriptional regulator rbh
S12_scaffold_1886_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3011..3775)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JJR0_AGRRK rbh
Uncharacterized protein {ECO:0000313|EMBL:KFC75867.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein rbh
S12_scaffold_1886_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3791..4108)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JJQ9_AGRRK
Uncharacterized protein {ECO:0000313|EMBL:KFC75868.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
S12_scaffold_1886_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4225..4707)
DNA (483bp) protein (161aa)
cupin n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00035FA0B8
Uncharacterized protein {ECO:0000313|EMBL:KFC75869.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
S12_scaffold_1886_curated_8
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4704..5135)
DNA (432bp) protein (144aa)
putative of gamma-carboxymuconolactone decarboxylase-like protein subunit (EC:4.1.1.44)
Putative of gamma-carboxymuconolactone decarboxylase-like protein subunit n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4IK51_RHIML
Uncharacterized protein {ECO:0000313|EMBL:KJR62673.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
S12_scaffold_1886_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5250..6260)
DNA (1011bp) protein (337aa)
Hydrolase of the alpha/beta superfamily n=2 Tax=Rhizobium meliloti RepID=M4IFS8_RHIML rbh
Putative hydrolase {ECO:0000313|EMBL:KFC75871.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hydrolase of the alpha/beta superfamily rbh
S12_scaffold_1886_curated_10
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6419..7510)
DNA (1092bp) protein (364aa)
Genomic scaffold, D445_Final2 n=1 Tax=Bordetella bronchiseptica D445 RepID=K4TC68_BORBO rbh
Uncharacterized protein {ECO:0000313|EMBL:EGI77177.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
hypothetical protein rbh
S12_scaffold_1886_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7680..8534)
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI00036C65B7
Alpha/beta hydrolase fold-3 domain protein {ECO:0000313|EMBL:KFC69254.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
alpha/beta hydrolase domain-containing protein
S12_scaffold_1886_curated_12
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8679..9092
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NYS9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33639.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
putative transmembrane protein
S12_scaffold_1886_curated_13
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9111..10133)
DNA (1023bp) protein (341aa)
Methyltransferase type 11 n=2 Tax=Acidiphilium RepID=A5G2B6_ACICJ rbh
type 11 methyltransferase rbh
Methyltransferase type 11 {ECO:0000313|EMBL:EGO96273.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
S12_scaffold_1886_curated_14
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10130..10897)
DNA (768bp) protein (256aa)
Putative membrane protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YBI1_9BRAD
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:EHR06217.1}; Flags: Precursor;; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
S12_scaffold_1886_curated_15
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10930..11556)
DNA (627bp) protein (209aa)
Anti-sigma factor, putative, ChrR family n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3CTF0_9BRAD
Anti-sigma factor, putative, ChrR family {ECO:0000313|EMBL:EJN12334.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
transcriptional regulator
S12_scaffold_1886_curated_16
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11553..12173)
DNA (621bp) protein (207aa)
RNA polymerase sigma factor n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IFT2_XANP2
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
S12_scaffold_1886_curated_17
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12229..12597)
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00037D3718
Uncharacterized protein {ECO:0000313|EMBL:CDX55575.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
S12_scaffold_1886_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12629..13228)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D479_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR84634.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
S12_scaffold_1886_curated_19
unknown

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13359..13433
DNA (75bp) protein (25aa)

This feature has no annotations

Displaying 19 items

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