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S12_scaffold_422_curated

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_422_curated_1
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..301)
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI0002899473
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
S12_scaffold_422_curated_2
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

729..2423
DNA (1695bp) protein (565aa)
hypothetical protein n=1 Tax=Methylocystis rosea RepID=UPI00037A5A89 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADB16150.1}; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
S12_scaffold_422_curated_3
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2404..2658)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UF63_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW12316.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
S12_scaffold_422_curated_4
unknown

Not on your lists

2940..3371
DNA (432bp) protein (144aa)

This feature has no annotations

S12_scaffold_422_curated_5
unknown

Not on your lists

3406..3504
DNA (99bp) protein (33aa)

This feature has no annotations

S12_scaffold_422_curated_6
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3564..5372)
DNA (1809bp) protein (603aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
UPI0003CF231C related cluster n=1 Tax=unknown RepID=UPI0003CF231C rbh
GTP-binding protein LepA rbh
S12_scaffold_422_curated_7
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5515..8979
DNA (3465bp) protein (1155aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C0Y7_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EIM75489.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
hypothetical protein rbh
S12_scaffold_422_curated_8
unknown

Not on your lists

8990..9127
DNA (138bp) protein (46aa)

This feature has no annotations

S12_scaffold_422_curated_9
Methanosphaerula palustris, Methanosphaerula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

9341..10363
DNA (1023bp) protein (341aa)
Restriction endonuclease n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GH34_METPE rbh
restriction endonuclease rbh
Restriction endonuclease {ECO:0000313|EMBL:ACL16439.1}; TaxID=521011 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanosphaerula.;" source="Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c).;"
S12_scaffold_422_curated_10
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10393..11028)
DNA (636bp) protein (212aa)
UPI0003CEE9F8 related cluster n=1 Tax=unknown RepID=UPI0003CEE9F8
Uncharacterized protein {ECO:0000313|EMBL:ESW82527.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
S12_scaffold_422_curated_11
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11029..11568)
DNA (540bp) protein (180aa)
UPI0003CF85E4 related cluster n=1 Tax=unknown RepID=UPI0003CF85E4
RNA polymerase sigma factor {ECO:0000313|EMBL:ESY75209.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
sigma-70 family RNA polymerase sigma factor
S12_scaffold_422_curated_12
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11756..12043
DNA (288bp) protein (96aa)
membrane protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037CD9B5
Membrane protein {ECO:0000313|EMBL:KJF67478.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
hypothetical protein
S12_scaffold_422_curated_13
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12110..13000
DNA (891bp) protein (297aa)
hypothetical protein n=2 Tax=Xanthobacteraceae RepID=UPI00037928A0 rbh
UPF0276 protein PMI09_04644 {ECO:0000256|HAMAP-Rule:MF_00697}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hypothetical protein rbh
S12_scaffold_422_curated_14
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13005..13808
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003804F37 rbh
hypothetical protein rbh
Hypothetical conserved protein {ECO:0000313|EMBL:ABC89412.1}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
S12_scaffold_422_curated_15
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13801..14304
DNA (504bp) protein (168aa)
Putative membrane protein n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0B4K7_RHILV
Putative membrane protein {ECO:0000313|EMBL:EJC64112.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
hypothetical protein
S12_scaffold_422_curated_16
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14317..14970)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P6F3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34008.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
transcriptional regulator, TetR family
S12_scaffold_422_curated_17
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15209..16165
DNA (957bp) protein (319aa)
Putative homocysteine S-methyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFX2_PELHB rbh
Putative homocysteine S-methyltransferase {ECO:0000313|EMBL:CDX40633.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
putative homocysteine S-methyltransferase rbh
S12_scaffold_422_curated_18
unknown

Not on your lists

16219..16410
DNA (192bp) protein (64aa)

This feature has no annotations

S12_scaffold_422_curated_19
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16560..17000
DNA (441bp) protein (147aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Alkylhydroperoxidase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HK01_9RHIZ
alkylhydroperoxidase
S12_scaffold_422_curated_20
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17049..18053)
DNA (1005bp) protein (335aa)
Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HK03_9RHIZ rbh
Cytochrome bd ubiquinol oxidase subunit II {ECO:0000313|EMBL:EHK58943.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
cytochrome bd ubiquinol oxidase subunit II rbh
S12_scaffold_422_curated_21
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18091..19449)
DNA (1359bp) protein (453aa)
UPI0003CE69FA related cluster n=1 Tax=unknown RepID=UPI0003CE69FA rbh
Cytochrome D ubiquinol oxidase subunit I {ECO:0000313|EMBL:ESW79877.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
cytochrome bd-type quinol oxidase, subunit 1 rbh
S12_scaffold_422_curated_22
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19706..20875
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YAA7_MESOW rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEH86506.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
S12_scaffold_422_curated_23
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21001..21339
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TFU7_MESCW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV09977.1}; Flags: Precursor;; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
S12_scaffold_422_curated_24
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21462..21740
DNA (279bp) protein (93aa)
UPI0003D05708 related cluster n=1 Tax=unknown RepID=UPI0003D05708
XRE family transcriptional regulator {ECO:0000313|EMBL:ESX80400.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
helix-turn-helix domain-containing protein
S12_scaffold_422_curated_25
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21868..23607
DNA (1740bp) protein (580aa)
Sulfate transporter family protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HK53_9RHIZ rbh
Sulfate transporter family protein {ECO:0000313|EMBL:EHK58868.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
sulfate transporter rbh
S12_scaffold_422_curated_26
Roseobacter sp. SK209-2-6, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23627..25561)
DNA (1935bp) protein (645aa)
Uncharacterized protein n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4EWF4_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:EBA15907.1}; TaxID=388739 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. SK209-2-6.;"
diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) rbh
S12_scaffold_422_curated_27
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25830..26279
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M558_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF17271.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
S12_scaffold_422_curated_28
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26320..27231)
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TFT6_MESCW rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADV09966.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
S12_scaffold_422_curated_29
Mesorhizobium sp. LNJC372A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27328..28047
DNA (720bp) protein (240aa)
UPI0003CE9961 related cluster n=1 Tax=unknown RepID=UPI0003CE9961
TetR family transcriptional regulator {ECO:0000313|EMBL:ESY56785.1}; TaxID=1287256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC372A00.;"
TetR family transcriptional regulator
S12_scaffold_422_curated_30
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28044..28997
DNA (954bp) protein (318aa)
Secretion protein HlyD family protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HK59_9RHIZ rbh
Secretion protein HlyD family protein {ECO:0000313|EMBL:EHK58874.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein rbh
Displaying items 1-30 of 53 in total

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