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S12_scaffold_18_curated

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Displaying items 1-30 of 279 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_18_curated_1
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18..284
DNA (267bp) protein (89aa)
transposase n=1 Tax=Elioraea tepidiphila RepID=UPI0003618060
Uncharacterized protein {ECO:0000313|EMBL:EAQ34238.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
transposase IS3/IS911 family protein
S12_scaffold_18_curated_2
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

278..1117
DNA (840bp) protein (280aa)
integrase n=1 Tax=Elioraea tepidiphila RepID=UPI0003710BB3 rbh
integrase catalytic subunit rbh
Integrase catalytic region {ECO:0000313|EMBL:ABS69227.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
S12_scaffold_18_curated_3

Not on your lists

comp(1426..2424)
DNA (999bp) protein (333aa)
Putative NosX protein n=1 Tax=uncultured bacterium 1042 RepID=B8R8U5_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN71013.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
nosX; NosX accesory protein rbh
S12_scaffold_18_curated_4

Not on your lists

comp(2426..2989)
DNA (564bp) protein (188aa)
NosL copper chaperone n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00035E07F2
Uncharacterized protein {ECO:0000313|EMBL:KKN71014.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
nosL; NosL copper chaperone
S12_scaffold_18_curated_5

Not on your lists

comp(2986..3813)
DNA (828bp) protein (276aa)
Putative NosY nitrous oxide metabolic protein n=1 Tax=uncultured bacterium 1042 RepID=B8R8U3_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN71015.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
nosY; copper ABC transporter permease protein NosY
S12_scaffold_18_curated_6

Not on your lists

comp(3810..4730)
DNA (921bp) protein (307aa)
Putative copper ABC transporter ATP-binding protein NosF n=1 Tax=uncultured bacterium 1042 RepID=B8R8U2_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN71016.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
nosF; copper ABC transporter ATP-binding protein NosF rbh
S12_scaffold_18_curated_7

Not on your lists

comp(4730..6109)
DNA (1380bp) protein (460aa)
Putative NosD periplasmic copper-binding n=1 Tax=uncultured bacterium 1042 RepID=B8R8U1_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN71017.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
nosD; NosD nitrous oxidase accessory protein rbh
S12_scaffold_18_curated_8

Not on your lists

comp(6112..8040)
DNA (1929bp) protein (643aa)
Nitrous-oxide reductase {ECO:0000256|HAMAP-Rule:MF_00716}; EC=1.7.2.4 {ECO:0000256|HAMAP-Rule:MF_00716};; N(2)OR {ECO:0000256|HAMAP-Rule:MF_00716}; N2O reductase {ECO:0000256|HAMAP-Rule:MF_00716}; Flags: Precursor;; TaxID=548897 species="Bacteria; environmental samples.;" source="uncultured bacterium 1042.;"
nosZ; NosZ nitrous oxide reductase (EC:1.7.2.4) rbh
Nitrous-oxide reductase n=1 Tax=uncultured bacterium 1042 RepID=B8R8U0_9BACT rbh
S12_scaffold_18_curated_9

Not on your lists

comp(8062..10374)
DNA (2313bp) protein (771aa)
Putative NosR n=1 Tax=uncultured bacterium 1042 RepID=B8R8T9_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN71019.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
nosR; NosR regulatory protein for N2O reductase rbh
S12_scaffold_18_curated_10

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10599..11471
DNA (873bp) protein (291aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium 1042 RepID=B8R8T8_9BACT rbh
Putative uncharacterized protein {ECO:0000313|EMBL:ACF98094.1}; TaxID=548897 species="Bacteria; environmental samples.;" source="uncultured bacterium 1042.;"
hypothetical protein
S12_scaffold_18_curated_11
unknown

Not on your lists

12015..12164
DNA (150bp) protein (50aa)

This feature has no annotations

S12_scaffold_18_curated_12
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12454..12810)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11MW8_MESSB
Uncharacterized protein {ECO:0000313|EMBL:KJS07993.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
hypothetical protein
S12_scaffold_18_curated_13
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12807..13313)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T1CPA6_9ZZZZ
Universal stress protein {ECO:0000313|EMBL:KJS07994.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
hypothetical protein
S12_scaffold_18_curated_14
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13327..14604)
DNA (1278bp) protein (426aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B7C4_9RHIZ rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGK58157.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
S12_scaffold_18_curated_15
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14748..15026)
DNA (279bp) protein (93aa)
aminotransferase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036E89F1
Aminotransferase {ECO:0000313|EMBL:KJS18684.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
amylo-alpha-1,6-glucosidase family
S12_scaffold_18_curated_16
unknown

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15590..15817
DNA (228bp) protein (76aa)

This feature has no annotations

S12_scaffold_18_curated_17
unknown

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comp(15852..15995)
DNA (144bp) protein (48aa)

This feature has no annotations

S12_scaffold_18_curated_18
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16504..17241)
DNA (738bp) protein (246aa)
UPI0003D001C3 related cluster n=1 Tax=unknown RepID=UPI0003D001C3 rbh
Cytochrome c-type protein {ECO:0000256|PIRNR:PIRNR000013}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
napC; NapC membrane-bound tetraheme cytochrome c subunit rbh
S12_scaffold_18_curated_19
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17242..17739)
DNA (498bp) protein (166aa)
UPI0003D06806 related cluster n=1 Tax=unknown RepID=UPI0003D06806
Periplasmic nitrate reductase, electron transfer subunit {ECO:0000256|PIRNR:PIRNR006105}; Diheme cytochrome c NapB {ECO:0000256|PIRNR:PIRNR006105}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
napB; Periplasmic nitrate reductase, electron transfer subunit
S12_scaffold_18_curated_20
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17712..20213)
DNA (2502bp) protein (834aa)
Nitrate reductase {ECO:0000256|HAMAP-Rule:MF_01630, ECO:0000256|SAAS:SAAS00064461}; EC=1.7.99.4 {ECO:0000256|HAMAP-Rule:MF_01630, ECO:0000256|SAAS:SAAS00064461};; Flags: Precursor;; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Nitrate reductase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I1E4_9RHIZ rbh
napA; periplasmic nitrate reductase rbh
S12_scaffold_18_curated_21
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20210..20503)
DNA (294bp) protein (98aa)
UPI0003CFB8D9 related cluster n=1 Tax=unknown RepID=UPI0003CFB8D9
Glutamate synthase subunit beta {ECO:0000313|EMBL:ESZ20082.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
napD; nitrate reductase chaperone assembly protein NapD
S12_scaffold_18_curated_22
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20508..20705)
DNA (198bp) protein (66aa)
UPI0003CFA618 related cluster n=1 Tax=unknown RepID=UPI0003CFA618
Nitrate reductase {ECO:0000313|EMBL:ESZ20081.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
napE; NapE component of periplasmic nitrate reductase
S12_scaffold_18_curated_23
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20814..22055)
DNA (1242bp) protein (414aa)
NnrS family protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BT07_9RHIZ rbh
NnrS family protein {ECO:0000313|EMBL:EIM72709.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
hypothetical protein rbh
S12_scaffold_18_curated_24
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22055..22369)
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F31983
Uncharacterized protein {ECO:0000313|EMBL:CEG07056.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
S12_scaffold_18_curated_25
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22500..23570)
DNA (1071bp) protein (357aa)
nirK; nitrite reductase, copper-containing (EC:1.7.2.1)
Copper-containing nitrite reductase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RBB8_9RHIZ rbh
Multicopper oxidase {ECO:0000313|EMBL:KJS18680.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
S12_scaffold_18_curated_trna_6
unknown

Not on your lists

comp(24579..24652)
DNA (74bp)
transferRNA His
S12_scaffold_18_curated_26
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24890..25342)
DNA (453bp) protein (151aa)
Phasin n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HXV8_9RHIZ
Phasin {ECO:0000313|EMBL:EHK54434.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
phasin
S12_scaffold_18_curated_27
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25610..29398
DNA (3789bp) protein (1263aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
PAS sensor protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HXV7_9RHIZ rbh
PAS sensor protein rbh
S12_scaffold_18_curated_28
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29556..30602
DNA (1047bp) protein (349aa)
Extracellular solute-binding protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HXV6_9RHIZ rbh
Extracellular solute-binding protein {ECO:0000313|EMBL:EHK54432.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
extracellular solute-binding protein rbh
S12_scaffold_18_curated_29
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30697..32400
DNA (1704bp) protein (568aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HXV5_9RHIZ rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EHK54431.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
binding-protein-dependent transport system inner membrane protein rbh
Displaying items 1-30 of 279 in total

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