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S12_scaffold_730_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_730_curated_1
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1150
DNA (1149bp) protein (383aa)
Transglycosylase n=1 Tax=Sphingomonas aromaticivorans RepID=O85953_SPHAR rbh
Transglycosylase {ECO:0000313|EMBL:AAD03969.1}; Flags: Precursor;; TaxID=48935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (Sphingomonas aromaticivorans).;"
lytic transglycosylase, catalytic rbh
S12_scaffold_730_curated_2
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1120..1392)
DNA (273bp) protein (91aa)
Uncharacterized protein n=2 Tax=Sphingomonas aromaticivorans RepID=A4XE95_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP64256.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_730_curated_3
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1403..1924)
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003733FC4 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:KHS42344.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
S12_scaffold_730_curated_4
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2013..2372)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MFG8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW15985.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
S12_scaffold_730_curated_5
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2712..3026
DNA (315bp) protein (105aa)
membrane protein n=1 Tax=Sphingobium xenophagum RepID=UPI00035F0094
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAD03965.1}; Flags: Precursor;; TaxID=48935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (Sphingomonas aromaticivorans).;"
S12_scaffold_730_curated_6
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3085..3369
DNA (285bp) protein (95aa)
conjugal transfer protein TraL n=1 Tax=Sphingobium xenophagum RepID=UPI0003734DC7
TraL family protein
IncF plasmid conjugative transfer pilus assembly protein TraL {ECO:0000313|EMBL:CCW15983.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
S12_scaffold_730_curated_7
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3383..3994
DNA (612bp) protein (204aa)
IncF plasmid conjugative transfer pilus assembly protein TraE n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MJZ1_9SPHN rbh
IncF plasmid conjugative transfer pilus assembly protein TraE {ECO:0000313|EMBL:CCW15982.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
TraE family protein rbh
S12_scaffold_730_curated_8
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3994..4791
DNA (798bp) protein (266aa)
IncF plasmid conjugative transfer pilus assembly protein TraK n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MG76_9SPHN rbh
IncF plasmid conjugative transfer pilus assembly protein TraK {ECO:0000313|EMBL:CCW15981.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein rbh
S12_scaffold_730_curated_9
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4791..6158
DNA (1368bp) protein (456aa)
conjugal transfer protein TraB n=1 Tax=Sphingobium xenophagum RepID=UPI000365D3EF rbh
IncF plasmid conjugative transfer pilus assembly protein TraB {ECO:0000313|EMBL:CCW15980.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
TraB pilus assembly family protein rbh
S12_scaffold_730_curated_10
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6169..7068
DNA (900bp) protein (300aa)
thiol:disulfide interchange protein DsbC n=1 Tax=Sphingobium xenophagum RepID=UPI0003684C71 rbh
Thiol:disulfide interchange protein DsbC {ECO:0000313|EMBL:CCW15979.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein rbh
S12_scaffold_730_curated_11
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7065..8210
DNA (1146bp) protein (382aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00037972EE rbh
hypothetical protein rbh
Conjugal transfer pilus assembly protein TraV {ECO:0000313|EMBL:KHS42336.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
S12_scaffold_730_curated_12
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8217..10823
DNA (2607bp) protein (869aa)
Type IV secretion/conjugal transfer ATPase, VirB4 family n=2 Tax=Sphingomonas aromaticivorans RepID=A4XE86_NOVAD rbh
type IV secretion/conjugal transfer ATPase rbh
Type IV secretion/conjugal transfer ATPase, VirB4 family {ECO:0000313|EMBL:ABP64247.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_730_curated_13
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10820..11179
DNA (360bp) protein (120aa)
Uncharacterized protein n=2 Tax=Sphingomonas aromaticivorans RepID=A4XE85_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHS42333.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
S12_scaffold_730_curated_14
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11172..11738
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XE84_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP64245.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_730_curated_15
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11722..12276
DNA (555bp) protein (185aa)
Uncharacterized protein n=2 Tax=Sphingomonas aromaticivorans RepID=A4XE83_NOVAD rbh
hypothetical protein rbh
Type IV secretory pathway protease TraF-like protein {ECO:0000313|EMBL:KHS42331.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
S12_scaffold_730_curated_16
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12273..12962
DNA (690bp) protein (230aa)
Uncharacterized protein n=2 Tax=Sphingomonas aromaticivorans RepID=A4XE82_NOVAD rbh
hypothetical protein rbh
Conjugal transfer pilus assembly protein TraW {ECO:0000313|EMBL:KHS42330.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
S12_scaffold_730_curated_17
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12959..13225
DNA (267bp) protein (89aa)
Putative inner membrane protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MJY0_9SPHN
Putative inner membrane protein {ECO:0000313|EMBL:CCW15972.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
S12_scaffold_730_curated_18
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13222..14244
DNA (1023bp) protein (341aa)
TraU family protein n=2 Tax=Sphingomonas aromaticivorans RepID=A4XE80_NOVAD rbh
TraU family protein rbh
TraU family protein {ECO:0000313|EMBL:ABP64241.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_730_curated_19
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14253..15017
DNA (765bp) protein (255aa)
Uncharacterized protein n=2 Tax=Sphingomonas aromaticivorans RepID=A4XE79_NOVAD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABP64240.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_730_curated_20
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15019..17133
DNA (2115bp) protein (705aa)
Mating pair stabilisation TraN n=2 Tax=Sphingomonas aromaticivorans RepID=A4XE78_NOVAD rbh
mating pair stabilisation TraN rbh
Conjugal transfer mating pair stabilization protein TraN {ECO:0000313|EMBL:KHS42326.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
S12_scaffold_730_curated_21
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17114..17500
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003770A49
Uncharacterized protein {ECO:0000313|EMBL:CCW15968.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
S12_scaffold_730_curated_22
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17497..18309
DNA (813bp) protein (271aa)
conjugal transfer protein TraF n=1 Tax=Sphingobium xenophagum RepID=UPI000373885E rbh
IncF plasmid conjugative transfer pilus assembly protein TraF {ECO:0000313|EMBL:CCW15967.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein rbh
S12_scaffold_730_curated_23
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18309..19760
DNA (1452bp) protein (484aa)
conjugal transfer protein TraH n=1 Tax=Sphingobium xenophagum RepID=UPI00036CE298 rbh
TraH family protein rbh
TraH family protein {ECO:0000313|EMBL:ABP64236.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_730_curated_24
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19774..22815
DNA (3042bp) protein (1014aa)
IncF plasmid conjugative transfer protein TraG n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MFF0_9SPHN rbh
IncF plasmid conjugative transfer protein TraG {ECO:0000313|EMBL:CCW15965.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
conjugal transfer protein TraG
S12_scaffold_730_curated_25
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22820..23017)
DNA (198bp) protein (66aa)
Uncharacterized protein n=2 Tax=Sphingomonas aromaticivorans RepID=A4XE73_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP64234.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_730_curated_26
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23174..23572)
DNA (399bp) protein (133aa)
Putative HxlR family transcriptional regulator n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZWJ5_9SPHN
Putative HxlR family transcriptional regulator {ECO:0000313|EMBL:GAD49744.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
S12_scaffold_730_curated_27
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23758..24204
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A4R5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49743.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
membrane-associated protein in eicosanoid and glutathione metabolism (mapeg)
S12_scaffold_730_curated_28
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24201..24509
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI00037BD67F
Uncharacterized protein {ECO:0000313|EMBL:GAD49742.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
S12_scaffold_730_curated_29
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24550..24921
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y8Y7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49741.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
glyoxalase/bleomycin resistance protein/dioxygenase
Displaying 29 items

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