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S12_scaffold_1273_curated

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_1273_curated_1
unknown

Not on your lists

comp(1..120)
DNA (120bp) protein (40aa)

This feature has no annotations

S12_scaffold_1273_curated_2
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(123..1097)
DNA (975bp) protein (325aa)
RDD protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB64_NOVAD rbh
RDD domain-containing protein {ECO:0000313|EMBL:KHS43347.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein rbh
S12_scaffold_1273_curated_3
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1097..2188)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB63_NOVAD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD24910.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_1273_curated_4
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2185..3495)
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB62_NOVAD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD24911.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_1273_curated_5
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3510..4487)
DNA (978bp) protein (326aa)
ATPase AAA_3 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB61_NOVAD rbh
ATPase {ECO:0000313|EMBL:KHS43350.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
ATPase rbh
S12_scaffold_1273_curated_6
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4484..5779)
DNA (1296bp) protein (432aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB60_NOVAD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD24913.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_1273_curated_7
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5776..6369)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB59_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:KHS43352.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
S12_scaffold_1273_curated_8
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6497..7390)
DNA (894bp) protein (298aa)
prephenate dehydratase (EC:4.2.1.51) rbh
Prephenate dehydratase {ECO:0000313|EMBL:ABD24915.1}; EC=4.2.1.51 {ECO:0000313|EMBL:ABD24915.1};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Prephenate dehydratase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB58_NOVAD rbh
S12_scaffold_1273_curated_9
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7571..8200
DNA (630bp) protein (210aa)
Cytochrome c, class I n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB57_NOVAD
Cytochrome c, class I {ECO:0000313|EMBL:KHS43354.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
cytochrome c, class I
S12_scaffold_1273_curated_10
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8293..8976)
DNA (684bp) protein (228aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000255|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000255|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01547}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
23S rRNA methyltransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B62C0E rbh
ribosomal RNA methyltransferase RrmJ/FtsJ rbh
S12_scaffold_1273_curated_11
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8973..10343)
DNA (1371bp) protein (457aa)
Ppx/GppA phosphatase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB52_NOVAD rbh
Ppx/GppA phosphatase {ECO:0000313|EMBL:KHS43358.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
Ppx/GppA phosphatase rbh
S12_scaffold_1273_curated_trna_1
unknown

Not on your lists

10504..10574
DNA (71bp)
transferRNA Gln
S12_scaffold_1273_curated_12
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10846..11718
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000365FFD4
Serine dehydrogenase proteinase {ECO:0000313|EMBL:KHS43386.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
S12_scaffold_1273_curated_13
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11729..11911
DNA (183bp) protein (61aa)
Uncharacterized protein {ECO:0000313|EMBL:KHS43387.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
S12_scaffold_1273_curated_14
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11936..18016)
DNA (6081bp) protein (2027aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0H2D0_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB06233.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
S12_scaffold_1273_curated_15
unknown

Not on your lists

comp(18024..18194)
DNA (171bp) protein (57aa)

This feature has no annotations

S12_scaffold_1273_curated_16
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18194..18760)
DNA (567bp) protein (189aa)
Phage protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8W3M9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHS43392.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
S12_scaffold_1273_curated_17
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18753..19046)
DNA (294bp) protein (98aa)
Uncharacterized protein {ECO:0000313|EMBL:KHS43393.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
S12_scaffold_1273_curated_18
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19049..19666)
DNA (618bp) protein (206aa)
Uncharacterized protein {ECO:0000313|EMBL:KHS43394.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
S12_scaffold_1273_curated_19
unknown

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19790..20137
DNA (348bp) protein (116aa)

This feature has no annotations

S12_scaffold_1273_curated_20
unknown

Not on your lists

comp(20277..20639)
DNA (363bp) protein (121aa)

This feature has no annotations

S12_scaffold_1273_curated_21
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20636..21154)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8W5H7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU14946.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
DNA packaging protein
S12_scaffold_1273_curated_22
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21151..21396)
DNA (246bp) protein (82aa)
Uncharacterized protein {ECO:0000313|EMBL:KHS43397.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
S12_scaffold_1273_curated_23
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21429..21707)
DNA (279bp) protein (93aa)
Uncharacterized protein {ECO:0000313|EMBL:KHS43398.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
S12_scaffold_1273_curated_24
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21846..22967)
DNA (1122bp) protein (374aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003691EDD
hypothetical protein
AAA ATPase {ECO:0000313|EMBL:EGE59344.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
Displaying 25 items

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