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S12_scaffold_652_curated

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Displaying items 1-30 of 36 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_652_curated_1
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..865)
DNA (864bp) protein (288aa)
Uncharacterized protein (Fragment) n=1 Tax=Sphingobium baderi LL03 RepID=T0GQI5_9SPHN rbh
TrbL/VirB6 plasmid conjugal transfer protein {ECO:0000313|EMBL:AKH43000.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
conjugal transfer protein TrbL rbh
S12_scaffold_652_curated_2
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(862..1245)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GSJ6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02933.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
S12_scaffold_652_curated_3
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1259..1978)
DNA (720bp) protein (240aa)
Conjugal transfer protein TrbJ n=1 Tax=Sphingobium baderi LL03 RepID=T0HZJ4_9SPHN rbh
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:EQB02934.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
conjugal transfer protein TrbJ rbh
S12_scaffold_652_curated_4
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1975..4464)
DNA (2490bp) protein (830aa)
Conjugal transfer protein TrbE n=1 Tax=Sphingobium baderi LL03 RepID=T0HUG1_9SPHN rbh
Conjugal transfer protein TrbE {ECO:0000313|EMBL:EQB02935.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
conjugal transfer ATPase TrbE rbh
S12_scaffold_652_curated_5
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4461..4742)
DNA (282bp) protein (94aa)
Conjugal transfer protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GGS8_9SPHN
Conjugal transfer protein {ECO:0000313|EMBL:EQB02936.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
type IV secretory pathway, VirB3 family protein
S12_scaffold_652_curated_6
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4739..5107)
DNA (369bp) protein (123aa)
Conjugal transfer protein TrbC n=1 Tax=Sphingobium baderi LL03 RepID=T0GQI8_9SPHN
Conjugal transfer protein TrbC {ECO:0000313|EMBL:EQB02937.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
conjugal transfer protein TrbC
S12_scaffold_652_curated_7
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5104..6090)
DNA (987bp) protein (329aa)
Conjugal transfer protein TrbB n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GX39_9SPHN rbh
Conjugal transfer protein TrbB {ECO:0000313|EMBL:EQB04503.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
P-type conjugative transfer ATPase TrbB rbh
S12_scaffold_652_curated_8
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6319..6747)
DNA (429bp) protein (143aa)
CopG family transcripitonal regulator n=1 Tax=Sphingobium baderi LL03 RepID=T0GGT3_9SPHN
CopG family transcripitonal regulator {ECO:0000313|EMBL:EQB02941.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
helix-turn-helix domain-containing protein
S12_scaffold_652_curated_9
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6757..8742)
DNA (1986bp) protein (662aa)
Conjugal transfer protein TraG n=1 Tax=Sphingobium baderi LL03 RepID=T0GQJ1_9SPHN rbh
Conjugal transfer protein TraG {ECO:0000313|EMBL:EQB02942.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
conjugal transfer coupling protein TraG rbh
S12_scaffold_652_curated_10
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8758..10524)
DNA (1767bp) protein (589aa)
Type VI secretion protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GSK6_9SPHN rbh
Type VI secretion protein {ECO:0000313|EMBL:EQB02943.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein rbh
S12_scaffold_652_curated_11
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10763..11344)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HZK1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB02944.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein rbh
S12_scaffold_652_curated_12
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11341..12228)
DNA (888bp) protein (296aa)
Lytic transglycosylase n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HGI8_9SPHN rbh
Lytic transglycosylase {ECO:0000313|EMBL:EQB12132.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
lytic transglycosylase subunit rbh
S12_scaffold_652_curated_13
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12232..12564)
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489872
Uncharacterized protein {ECO:0000313|EMBL:EAT08725.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
hypothetical protein
S12_scaffold_652_curated_14
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12545..13123)
DNA (579bp) protein (193aa)
conjugal transfer protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00035CD3CD rbh
Type IV secretory pathway protease TraF-like protein rbh
Type IV secretory pathway protease TraF-like protein {ECO:0000313|EMBL:ABQ70031.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
S12_scaffold_652_curated_15
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13120..13707)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HZK4_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB02949.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
S12_scaffold_652_curated_16
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13704..13895)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HUH2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02950.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
C-5 cytosine-specific DNA methylase
S12_scaffold_652_curated_17
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13838..14599)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI00035C9F9C rbh
Uncharacterized protein {ECO:0000313|EMBL:GAJ29141.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
hypothetical protein
S12_scaffold_652_curated_18
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15044..16192)
DNA (1149bp) protein (383aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GGS4_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB02931.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
putative uncharacterized bacteriophage protein of unknown function
S12_scaffold_652_curated_19
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16497..17378)
DNA (882bp) protein (294aa)
RepA replication protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GSL6_9SPHN rbh
RepA replication protein {ECO:0000313|EMBL:EQB02953.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
putative replication protein A rbh
S12_scaffold_652_curated_20
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17375..17641)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HZK7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02954.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
S12_scaffold_652_curated_21
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17771..18319)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HUH6_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB02955.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
S12_scaffold_652_curated_22
unknown

Not on your lists

comp(18336..18536)
DNA (201bp) protein (67aa)
hypothetical protein
S12_scaffold_652_curated_23
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18692..18958)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GGU4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02956.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
S12_scaffold_652_curated_24
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19457..19765)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1AY94_PARDP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL68238.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
S12_scaffold_652_curated_25
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19834..20505)
DNA (672bp) protein (224aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
DNA-methyltransferase n=1 Tax=Sphingobium baderi LL03 RepID=T0HUC0_9SPHN rbh
DNA methylase N-4/N-6 domain-containing protein rbh
S12_scaffold_652_curated_26
unknown

Not on your lists

comp(20865..21041)
DNA (177bp) protein (59aa)

This feature has no annotations

S12_scaffold_652_curated_27
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21542..21841)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VCK5_SPHWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ70021.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
S12_scaffold_652_curated_28
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22164..22445)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GSE9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02878.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
S12_scaffold_652_curated_29
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22589..22852
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S369_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH50455.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
S12_scaffold_652_curated_30
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22934..23239
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HUC3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02880.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
Displaying items 1-30 of 36 in total

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