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S12_scaffold_46_curated

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Displaying items 1-30 of 223 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_46_curated_1
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(82..2034)
DNA (1953bp) protein (651aa)
Acetyl-coenzyme A synthetase {ECO:0000255|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000255|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000255|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000255|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000255|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000255|HAMAP-Rule:MF_01123}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
acetyl-coenzyme A synthetase (EC:6.2.1.1) rbh
Acetyl-coenzyme A synthetase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=ACSA_NOVAD rbh
S12_scaffold_46_curated_2
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2399..3121
DNA (723bp) protein (241aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G518_NOVAD rbh
Two component transcriptional regulator {ECO:0000313|EMBL:KHS48799.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
two component transcriptional regulator rbh
S12_scaffold_46_curated_3
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3118..4428
DNA (1311bp) protein (437aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G519_NOVAD rbh
periplasmic sensor signal transduction histidine kinase rbh
S12_scaffold_46_curated_4
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4550..5245
DNA (696bp) protein (232aa)
carbonate dehydratase (EC:4.2.1.1) rbh
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Carbonic anhydrase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G520_NOVAD rbh
S12_scaffold_46_curated_5
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5242..6786
DNA (1545bp) protein (515aa)
Sulphate transporter n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G521_NOVAD rbh
sulfate transporter rbh
Sulphate transporter {ECO:0000313|EMBL:ABD27052.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_46_curated_6
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7032..7880
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G522_NOVAD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD27051.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_46_curated_7
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7975..9504)
DNA (1530bp) protein (510aa)
Methyl-accepting chemotaxis protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IG07_9SPHN rbh
methyl-accepting chemotaxis protein rbh
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:KHS48646.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
S12_scaffold_46_curated_8
unknown

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comp(9543..9944)
DNA (402bp) protein (134aa)

This feature has no annotations

S12_scaffold_46_curated_9
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9993..10340)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G802_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD26021.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_46_curated_10
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10424..11464
DNA (1041bp) protein (347aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
rsgA2; Putative ribosome biogenesis GTPase RsgA 2 (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Novosphingobium sp. AP12 RepID=J2GX43_9SPHN rbh
S12_scaffold_46_curated_11
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11457..11612
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J3AQ51_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL35019.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
S12_scaffold_46_curated_trna_5
unknown

Not on your lists

comp(11745..11816)
DNA (72bp)
transferRNA Gln
S12_scaffold_46_curated_12
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11951..12796)
DNA (846bp) protein (282aa)
Glutathione S-transferase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G542_NOVAD rbh
Glutathione S-transferase YghU {ECO:0000313|EMBL:KHS48096.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
glutathione S-transferase YghU rbh
S12_scaffold_46_curated_13
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12823..13509)
DNA (687bp) protein (229aa)
Phosphoglycolate phosphatase {ECO:0000313|EMBL:KHS42299.1}; EC=3.1.3.18 {ECO:0000313|EMBL:KHS42299.1};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
phosphoglycolate phosphatase (EC:3.1.3.18) rbh
Phosphoglycolate phosphatase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G930_NOVAD rbh
S12_scaffold_46_curated_14
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13571..14944
DNA (1374bp) protein (458aa)
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase (EC:2.3.1.157 2.7.7.23) rbh
Bifunctional protein GlmU {ECO:0000255|HAMAP-Rule:MF_01631}; Includes:; UDP-N-acetylglucosamine pyrophosphorylase {ECO:0000255|HAMAP-Rule:MF_01631}; EC=2.7.7.23 {ECO:0000255|HAMAP-Rule:MF_01631};; N-acetylglucosamine-1-phosphate uridyltransferase {ECO:0000255|HAMAP-Rule:MF_01631}; Includes:; Glucosamine-1-phosphate N-acetyltransferase {ECO:0000255|HAMAP-Rule:MF_01631}; EC=2.3.1.157 {ECO:0000255|HAMAP-Rule:MF_01631};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
N-acetylglucosamine-1-phosphate uridyltransferase n=1 Tax=Sphingomonas aromaticivorans RepID=UPI00003C7E61 rbh
S12_scaffold_46_curated_15
unknown

Not on your lists

comp(15129..15920)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0003706960
S12_scaffold_46_curated_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16321..16575
DNA (255bp) protein (85aa)
CopG-like DNA-binding protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L393_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO56382.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
CopG family transcriptional regulator
S12_scaffold_46_curated_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16579..16944
DNA (366bp) protein (122aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
twitching motility protein PilT n=1 Tax=Blastomonas sp. AAP53 RepID=UPI000314419D
twitching motility protein PilT
S12_scaffold_46_curated_18
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16965..18788
DNA (1824bp) protein (608aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16) rbh
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G926_NOVAD rbh
S12_scaffold_46_curated_19
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18785..19243
DNA (459bp) protein (153aa)
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G925_NOVAD
tRNA/rRNA methyltransferase
S12_scaffold_46_curated_trna_4
unknown

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comp(19278..19351)
DNA (74bp)
transferRNA Pro
S12_scaffold_46_curated_20
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19397..20185)
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G924_NOVAD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD25649.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_46_curated_21
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20182..21102)
DNA (921bp) protein (307aa)
Beta-lactamase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G923_NOVAD rbh
beta-lactamase-like protein rbh
Beta-lactamase-like protein {ECO:0000313|EMBL:ABD25650.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_46_curated_22
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21171..21560
DNA (390bp) protein (130aa)
Transcriptional regulator, ArsR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G922_NOVAD
ArsR family transcriptional regulator {ECO:0000313|EMBL:KHS42284.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
ArsR family transcriptional regulator
S12_scaffold_46_curated_23
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21689..22270
DNA (582bp) protein (194aa)
Metal-dependent phosphohydrolase, HD subdomain n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G918_NOVAD rbh
metal-dependent phosphohydrolase rbh
Metal-dependent phosphohydrolase, HD subdomain {ECO:0000313|EMBL:ABD25655.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_46_curated_24
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22434..22709)
DNA (276bp) protein (92aa)
Histone-like DNA-binding protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G911_NOVAD
histone-like DNA-binding protein
Histone-like DNA-binding protein {ECO:0000313|EMBL:ABD25662.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_46_curated_25
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23072..24268
DNA (1197bp) protein (399aa)
Secretion protein HlyD n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G910_NOVAD rbh
Secretion protein HlyD {ECO:0000313|EMBL:KHS44393.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
secretion protein HlyD rbh
S12_scaffold_46_curated_26
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24275..27418
DNA (3144bp) protein (1048aa)
Hydrophobe/amphiphile efflux-1 HAE1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G909_NOVAD rbh
Hydrophobe/amphiphile efflux-1 HAE1 {ECO:0000313|EMBL:ABD25664.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
hydrophobe/amphiphile efflux-1 protein rbh
S12_scaffold_46_curated_27
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27415..28869
DNA (1455bp) protein (485aa)
RND efflux system, outer membrane lipoprotein, NodT n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G908_NOVAD rbh
RND efflux system outer membrane lipoprotein NodT rbh
RND efflux system, outer membrane lipoprotein, NodT {ECO:0000313|EMBL:ABD25665.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_46_curated_28
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28894..30111)
DNA (1218bp) protein (406aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:GAO54019.1}; EC=2.3.1.9 {ECO:0000313|EMBL:GAO54019.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
acetyl-CoA C-acetyltransferase (EC:2.3.1.9) rbh
Acetyl-CoA acetyltransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USJ8_9SPHN rbh
Displaying items 1-30 of 223 in total

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