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S12_scaffold_62_curated

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Displaying items 1-30 of 178 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_62_curated_1
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(159..1085)
DNA (927bp) protein (309aa)
Site-specific recombinase, phage integrase family protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NBN0_ERYLH rbh
Tyrosine recombinase XerC {ECO:0000313|EMBL:AKH44025.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
site-specific recombinase, phage integrase rbh
S12_scaffold_62_curated_2
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1082..2464)
DNA (1383bp) protein (461aa)
Site-specific recombinase, phage integrase family protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NBN1_ERYLH rbh
Site-specific tyrosine recombinase XerC {ECO:0000313|EMBL:AKH44026.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
site-specific recombinase, phage integrase rbh
S12_scaffold_62_curated_3
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2544..3440)
DNA (897bp) protein (299aa)
UPI0003CF9993 related cluster n=1 Tax=unknown RepID=UPI0003CF9993 rbh
Uncharacterized protein {ECO:0000313|EMBL:ETA72474.1}; TaxID=935547 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium loti R7A.;"
hypothetical protein rbh
S12_scaffold_62_curated_4
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3437..4774)
DNA (1338bp) protein (446aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00037DAA5E rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB33868.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
HipA domain-containing protein rbh
S12_scaffold_62_curated_5
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4774..5043)
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI00031EFEA2
Uncharacterized protein {ECO:0000313|EMBL:EQB10327.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
helix-turn-helix domain-containing protein
S12_scaffold_62_curated_6
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5530..6774)
DNA (1245bp) protein (415aa)
integrase n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002EEE0B5 rbh
putative integrase rbh
Putative integrase {ECO:0000313|EMBL:BAI95168.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
S12_scaffold_62_curated_trna_3
unknown

Not on your lists

comp(6936..7019)
DNA (84bp)
transferRNA Leu
S12_scaffold_62_curated_7
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7243..8220
DNA (978bp) protein (326aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3Q7_NOVAD rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:KHS44145.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
NAD-dependent epimerase/dehydratase rbh
S12_scaffold_62_curated_8
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8244..8915)
DNA (672bp) protein (224aa)
Glutathione S-transferase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3Q8_NOVAD rbh
Glutathione S-transferase-like protein {ECO:0000313|EMBL:KHS44357.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
glutathione S-transferase-like protein rbh
S12_scaffold_62_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8991..10064)
DNA (1074bp) protein (358aa)
Putative MscS family transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IHP2_9SPHN rbh
putative MscS family transporter rbh
Putative MscS family transporter {ECO:0000313|EMBL:BAK66815.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
S12_scaffold_62_curated_10
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10165..10971)
DNA (807bp) protein (269aa)
putative glycosyltransferase (EC:2.1.1.64)
Putative glycosyltransferase {ECO:0000313|EMBL:AEK60656.1}; EC=2.1.1.64 {ECO:0000313|EMBL:AEK60656.1};; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
Putative glycosyltransferase n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AI73_COLFT
S12_scaffold_62_curated_11
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11022..11273)
DNA (252bp) protein (84aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7R0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHS44353.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
S12_scaffold_62_curated_12
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11309..11752)
DNA (444bp) protein (148aa)
CheW protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7Q9_9SPHN
Purine-binding chemotaxis protein CheW {ECO:0000313|EMBL:KHS44352.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
chemotaxis protein CheW
S12_scaffold_62_curated_13
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11784..12155)
DNA (372bp) protein (124aa)
chemotaxis protein CheY n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B54FCF
Two-component system, chemotaxis family,response regulator CheY {ECO:0000313|EMBL:KHS44351.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
two-component system, chemotaxis family,response regulator CheY
S12_scaffold_62_curated_14
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12176..12733)
DNA (558bp) protein (186aa)
Probable chemoreceptor glutamine deamidase CheD {ECO:0000256|HAMAP-Rule:MF_01440}; EC=3.5.1.44 {ECO:0000256|HAMAP-Rule:MF_01440, ECO:0000256|SAAS:SAAS00059151};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
chemotaxis protein CheD (EC:3.5.1.44)
Probable chemoreceptor glutamine deamidase CheD n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7Q7_9SPHN
S12_scaffold_62_curated_15
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12736..13752)
DNA (1017bp) protein (339aa)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099, ECO:0000256|SAAS:SAAS00070601};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
Chemotaxis response regulator protein-glutamate methylesterase n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z7Q6_9SPHN rbh
chemotaxis protein
S12_scaffold_62_curated_16
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13749..14618)
DNA (870bp) protein (290aa)
Chemotaxis protein methyltransferase {ECO:0000256|PIRNR:PIRNR000410}; EC=2.1.1.80 {ECO:0000256|PIRNR:PIRNR000410};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
chemotaxis protein CheR (EC:2.1.1.80) rbh
chemotaxis protein CheR n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B73408 rbh
S12_scaffold_62_curated_17
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14615..16864)
DNA (2250bp) protein (750aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
CheA signal transduction histidine kinase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7Q4_9SPHN rbh
chemotaxis protein CheA
S12_scaffold_62_curated_18
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16861..17154)
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B40824
Uncharacterized protein {ECO:0000313|EMBL:KHS44346.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
S12_scaffold_62_curated_19
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17436..18467
DNA (1032bp) protein (344aa)
Protein-glutamate methylesterase {ECO:0000256|SAAS:SAAS00070601}; EC=3.1.1.61 {ECO:0000256|SAAS:SAAS00070601};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
two-component system, chemotaxis family,response regulator CheB (EC:3.1.1.61) rbh
chemotaxis protein CheB n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3576A rbh
S12_scaffold_62_curated_20
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18667..19050)
DNA (384bp) protein (128aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7Q1_9SPHN
Flagellin-specific chaperone FliS-like protein {ECO:0000313|EMBL:KHS44344.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
flagellin-specific chaperone FliS-like protein
S12_scaffold_62_curated_21
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19050..20492)
DNA (1443bp) protein (481aa)
flagellar hook protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0CC3 rbh
Flagellar hook-associated protein 2 {ECO:0000313|EMBL:KHS44343.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
flagellar hook protein
S12_scaffold_62_curated_22
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20498..21676)
DNA (1179bp) protein (393aa)
Flagellar biosynthetic protein FlhB n=2 Tax=Novosphingobium RepID=F6IIW0_9SPHN rbh
Flagellar biosynthetic protein FlhB {ECO:0000313|EMBL:KHS44342.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
flagellar biosynthetic protein FlhB rbh
S12_scaffold_62_curated_23
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21686..22468)
DNA (783bp) protein (261aa)
Flagellar biosynthetic protein fliR n=2 Tax=Novosphingobium RepID=F6IIV9_9SPHN rbh
Flagellar biosynthetic protein fliR {ECO:0000256|RuleBase:RU003842}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
flagellar biosynthesis protein FliR
S12_scaffold_62_curated_24
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22481..22753)
DNA (273bp) protein (91aa)
Flagellar biosynthetic protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7P8_9SPHN
Flagellar biosynthetic protein FliQ {ECO:0000313|EMBL:KHS44340.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
flagellar biosynthesis protein FliQ
S12_scaffold_62_curated_25
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22759..23547)
DNA (789bp) protein (263aa)
Flagellar biosynthesis protein FliP {ECO:0000313|EMBL:KHS44339.1}; EC=3.1.1.3 {ECO:0000313|EMBL:KHS44339.1};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
Flagellar biosynthesis protein FliP n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7P7_9SPHN rbh
flagellar biosynthesis protein flip
S12_scaffold_62_curated_26
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23544..23858)
DNA (315bp) protein (105aa)
flagellar biogenesis protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B675F2
Flagellar biogenesis protein FliO {ECO:0000313|EMBL:KHS44338.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
flagellar biogenesis protein
S12_scaffold_62_curated_27
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23858..24166)
DNA (309bp) protein (103aa)
flagellar motor switch protein FliN n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3CCFB
Flagellar motor switch protein FliN/FliY {ECO:0000313|EMBL:KHS44337.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
flagellar motor switch protein FliN
S12_scaffold_62_curated_28
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24163..25101)
DNA (939bp) protein (313aa)
flagellar motor switch protein FliM n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B653B1
Flagellar motor switch protein FliM {ECO:0000313|EMBL:KHS44336.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
flagellar motor switch protein FliM
S12_scaffold_62_curated_29
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25168..25761)
DNA (594bp) protein (198aa)
Flagellar basal body-associated protein FliL n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7P3_9SPHN
Flagellar FliL protein {ECO:0000313|EMBL:KHS44335.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
flagellar basal body-associated protein FliL
Displaying items 1-30 of 178 in total

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