ggKbase home page

S12_scaffold_590_curated

Search features with annotation key words

Displaying 28 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_590_curated_1
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(87..1307)
DNA (1221bp) protein (407aa)
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC:1.14.13.-) rbh
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase {ECO:0000313|EMBL:ABD27225.1}; EC=1.14.13.- {ECO:0000313|EMBL:ABD27225.1};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4J8_NOVAD rbh
S12_scaffold_590_curated_2
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1304..3019)
DNA (1716bp) protein (572aa)
Alkaline phosphatase {ECO:0000256|PIRNR:PIRNR031924}; EC=3.1.3.1 {ECO:0000256|PIRNR:PIRNR031924};; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Type I phosphodiesterase/nucleotide pyrophosphatase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4J7_NOVAD rbh
type I phosphodiesterase/nucleotide pyrophosphatase rbh
S12_scaffold_590_curated_3
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3203..5263
DNA (2061bp) protein (687aa)
Cytochrome c biogenesis protein, transmembrane region n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4J6_NOVAD rbh
Cytochrome c biogenesis protein, transmembrane region {ECO:0000313|EMBL:ABD27227.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
cytochrome c biogenesis protein, transmembrane region rbh
S12_scaffold_590_curated_4
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5306..7609)
DNA (2304bp) protein (768aa)
DNA topoisomerase 4 subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00936, ECO:0000256|SAAS:SAAS00075954};; Topoisomerase IV subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
DNA topoisomerase IV subunit A (EC:5.99.1.3) rbh
DNA topoisomerase 4 subunit A n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4J4_NOVAD rbh
S12_scaffold_590_curated_5
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7731..8255
DNA (525bp) protein (175aa)
Protease I {ECO:0000313|EMBL:KHS42640.1}; EC=3.2.-.- {ECO:0000313|EMBL:KHS42640.1};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
protease I (EC:3.2.-.-)
glutamine amidotransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B70C83
S12_scaffold_590_curated_6
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8378..9568)
DNA (1191bp) protein (397aa)
mechanosensitive ion channel protein MscS n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B465BB rbh
Mechanosensitive ion channel MscS {ECO:0000313|EMBL:KHS42294.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
mechanosensitive ion channel protein MscS
S12_scaffold_590_curated_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(9630..9776)
DNA (147bp) protein (49aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000363CD11
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG91179.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
S12_scaffold_590_curated_8
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9978..10310)
DNA (333bp) protein (111aa)
Ferredoxin n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4J1_NOVAD
Ferredoxin {ECO:0000313|EMBL:KHS42293.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
ferredoxin
S12_scaffold_590_curated_9
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10316..11419)
DNA (1104bp) protein (368aa)
class V aminotransferase (EC:2.8.1.7) rbh
Aminotransferase, class V {ECO:0000313|EMBL:ABD27233.1}; EC=2.8.1.7 {ECO:0000313|EMBL:ABD27233.1};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Aminotransferase, class V n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4J0_NOVAD rbh
S12_scaffold_590_curated_10
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11416..12459)
DNA (1044bp) protein (348aa)
class V aminotransferase (EC:2.8.1.7) rbh
Aminotransferase, class V {ECO:0000313|EMBL:ABD27234.1}; EC=2.8.1.7 {ECO:0000313|EMBL:ABD27234.1};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Aminotransferase, class V n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4I9_NOVAD rbh
S12_scaffold_590_curated_11
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12591..13247
DNA (657bp) protein (219aa)
Hydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4I8_NOVAD rbh
Hydrolase {ECO:0000313|EMBL:KHS42290.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hydrolase rbh
S12_scaffold_590_curated_12
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13354..14232
DNA (879bp) protein (293aa)
Dienelactone hydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4I1_NOVAD rbh
dienelactone hydrolase rbh
Dienelactone hydrolase {ECO:0000313|EMBL:ABD27242.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_590_curated_13
unknown

Not on your lists

comp(14216..14374)
DNA (159bp) protein (53aa)

This feature has no annotations

S12_scaffold_590_curated_14
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14488..16371
DNA (1884bp) protein (628aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4G6_NOVAD rbh
methyl-accepting chemotaxis sensory transducer rbh
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:ABD27257.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_590_curated_15
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16418..16762
DNA (345bp) protein (115aa)
TonB-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4G5_NOVAD
TonB-like protein {ECO:0000313|EMBL:KHS44430.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
TonB-like protein
S12_scaffold_590_curated_16
unknown

Not on your lists

comp(16594..17118)
DNA (525bp) protein (175aa)

This feature has no annotations

S12_scaffold_590_curated_17
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17520..20099)
DNA (2580bp) protein (860aa)
AAA ATPase, central region n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4G3_NOVAD rbh
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
ATPase AAA rbh
S12_scaffold_590_curated_18
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20228..21859)
DNA (1632bp) protein (544aa)
Peptidase M28 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4G2_NOVAD rbh
peptidase M28 rbh
Peptidase M28 {ECO:0000313|EMBL:ABD27261.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_590_curated_19
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22061..24979
DNA (2919bp) protein (973aa)
Peptidase M16-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4G1_NOVAD rbh
Peptidase M16-like protein {ECO:0000313|EMBL:ABD27262.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
peptidase M16-like protein rbh
S12_scaffold_590_curated_20
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25077..25373
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4G0_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:KHS48739.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
S12_scaffold_590_curated_21
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25459..27048)
DNA (1590bp) protein (530aa)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-) rbh
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000255|HAMAP-Rule:MF_00121}; Short=Asp/Glu-ADT subunit B {ECO:0000255|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000255|HAMAP-Rule:MF_00121};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=GATB_NOVAD rbh
S12_scaffold_590_curated_22
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26994..28145)
DNA (1152bp) protein (384aa)
Acyltransferase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S1P8_9SPHN
Acyltransferase {ECO:0000313|EMBL:KHS48735.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
acyltransferase
S12_scaffold_590_curated_23
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28139..29635)
DNA (1497bp) protein (499aa)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-) rbh
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000255|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000255|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000255|HAMAP-Rule:MF_00120};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=GATA_NOVAD rbh
S12_scaffold_590_curated_24
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29635..29937)
DNA (303bp) protein (101aa)
gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000255|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000255|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000255|HAMAP-Rule:MF_00122};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=GATC_NOVAD
S12_scaffold_590_curated_25
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30038..30598)
DNA (561bp) protein (187aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4F3_NOVAD rbh
FKBP-type peptidylprolyl isomerase rbh
S12_scaffold_590_curated_26
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30813..31019)
DNA (207bp) protein (69aa)
30S ribosomal protein S21 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RS21_NOVAD
rpsU; 30S ribosomal protein S21
30S ribosomal protein S21 {ECO:0000255|HAMAP-Rule:MF_00358}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_590_curated_27
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31207..31608
DNA (402bp) protein (134aa)
camphor resistance protein CrcB n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=UPI00003C8060
camphor resistance protein CrcB
Putative fluoride ion transporter CrcB {ECO:0000255|HAMAP-Rule:MF_00454}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_590_curated_28
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31605..32924
DNA (1320bp) protein (440aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
ribosomal large subunit pseudouridine synthase C (EC:5.4.99.-) rbh
Pseudouridine synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4F0_NOVAD rbh
Displaying 28 items

View Taxonomy