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S12_scaffold_1073_curated

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Displaying 23 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_1073_curated_1
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(159..497)
DNA (339bp) protein (113aa)
Putative transposase n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N9X4_9SPHN
Putative transposase {ECO:0000313|EMBL:EAT07710.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
transposase IS66
S12_scaffold_1073_curated_2
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(457..813)
DNA (357bp) protein (119aa)
Putative transposase n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N9X3_9SPHN
Putative transposase {ECO:0000313|EMBL:EAT07711.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
IS66 Orf2 family protein
S12_scaffold_1073_curated_3
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(810..1091)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N9X2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EAT07712.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
S12_scaffold_1073_curated_4
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1365..2198)
DNA (834bp) protein (278aa)
dehydrogenase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A78D
Uncharacterized protein {ECO:0000313|EMBL:KJS08248.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
short-chain dehydrogenase/reductase SDR
S12_scaffold_1073_curated_5
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2622..3758)
DNA (1137bp) protein (379aa)
epoxide hydrolase 1 (EC:3.3.2.9) rbh
Epoxide hydrolase n=1 Tax=Pseudomonas sp. 19-rlim RepID=G3LGZ8_9PSED rbh
Epoxide hydrolase {ECO:0000313|EMBL:KHK89795.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
S12_scaffold_1073_curated_6
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4042..5268
DNA (1227bp) protein (409aa)
Rieske (2Fe-2S) iron-sulfur domain protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F216_SPHCR
Rieske (2Fe-2S) domain-containing protein
Rieske (2Fe-2S) iron-sulfur domain protein {ECO:0000313|EMBL:AEG51582.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
S12_scaffold_1073_curated_7
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5311..5673
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Nevskia ramosa RepID=UPI0003B68067
Uncharacterized protein {ECO:0000313|EMBL:EXS69055.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
hypothetical protein
S12_scaffold_1073_curated_8
unknown

Not on your lists

comp(5802..5975)
DNA (174bp) protein (58aa)

This feature has no annotations

S12_scaffold_1073_curated_9
RLO_Sphingomonadales_63_15, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6070..6447
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri MF28 RepID=U3HUP0_PSEST
Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
S12_scaffold_1073_curated_10
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6562..7356
DNA (795bp) protein (265aa)
Probable short-chain type dehydrogeanse/reductase n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NHG0_9SPHN
Short-chain dehydrogenase {ECO:0000313|EMBL:KJS07715.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
short-chain dehydrogenase/reductase SDR
S12_scaffold_1073_curated_11
unknown

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comp(7436..7585)
DNA (150bp) protein (50aa)

This feature has no annotations

S12_scaffold_1073_curated_12
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7856..8791)
DNA (936bp) protein (312aa)
IS4 family element, transposase n=1 Tax=Sphingomonas sp. ERG5 RepID=T1YUY1_9SPHN rbh
IS4 family element, transposase {ECO:0000313|EMBL:EZP79383.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
transposase, IS4 rbh
S12_scaffold_1073_curated_13
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8844..9647)
DNA (804bp) protein (268aa)
UPI0003D66F4A related cluster n=1 Tax=unknown RepID=UPI0003D66F4A rbh
Integrase {ECO:0000313|EMBL:ETI63450.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
integrase
S12_scaffold_1073_curated_14
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9640..10596)
DNA (957bp) protein (319aa)
UPI0003D5B446 related cluster n=1 Tax=unknown RepID=UPI0003D5B446 rbh
Integrase {ECO:0000313|EMBL:ETI63451.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
S12_scaffold_1073_curated_15
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10596..11837)
DNA (1242bp) protein (414aa)
UPI0003D64861 related cluster n=1 Tax=unknown RepID=UPI0003D64861 rbh
Integrase {ECO:0000313|EMBL:ETI63452.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
S12_scaffold_1073_curated_16
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12003..12200
DNA (198bp) protein (66aa)
Putative transposase n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCJ6_9SPHN
Putative transposase {ECO:0000313|EMBL:EAT08894.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
transposase IS66
S12_scaffold_1073_curated_17
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12329..12775
DNA (447bp) protein (149aa)
Transposase (Fragment) n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WCX0_9SPHN
transposase
Transposase {ECO:0000313|EMBL:EIZ78026.1}; Flags: Fragment;; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
S12_scaffold_1073_curated_18
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12704..13357)
DNA (654bp) protein (218aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas aeruginosa 2192 RepID=A3L6U8_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:KJS04070.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
TetR family transcriptional regulator
S12_scaffold_1073_curated_19
unknown

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comp(13350..13568)
DNA (219bp) protein (73aa)

This feature has no annotations

S12_scaffold_1073_curated_20
unknown

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13700..13957
DNA (258bp) protein (86aa)

This feature has no annotations

S12_scaffold_1073_curated_21
unknown

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comp(14084..14344)
DNA (261bp) protein (87aa)

This feature has no annotations

S12_scaffold_1073_curated_22
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14323..14862)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J2L2C9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ27637.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
S12_scaffold_1073_curated_23
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14859..15440)
DNA (582bp) protein (194aa)
DNA resolvase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI00028A3074 rbh
Resolvase, N terminal domain protein {ECO:0000313|EMBL:EIZ79833.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
resolvase
Displaying 23 items

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