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S12_scaffold_96_curated

Search features with annotation key words

Displaying items 1-30 of 153 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_96_curated_1
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

249..656
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9R4_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:KHS48171.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
S12_scaffold_96_curated_2
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(668..2167)
DNA (1500bp) protein (500aa)
Sulfate permease n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MSF7_9SPHN rbh
Sulfate permease {ECO:0000313|EMBL:KFG88974.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
sulfate transporter rbh
S12_scaffold_96_curated_3
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2349..3242)
DNA (894bp) protein (298aa)
NUDIX hydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9R6_NOVAD rbh
NUDIX hydrolase rbh
NUDIX hydrolase {ECO:0000313|EMBL:ABD25407.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_96_curated_4
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3242..4573)
DNA (1332bp) protein (444aa)
Twin-arginine translocation pathway signal n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9R7_NOVAD rbh
twin-arginine translocation pathway signal protein rbh
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:ABD25406.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_96_curated_5
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4573..5637)
DNA (1065bp) protein (355aa)
A/G-specific adenine glycosylase (EC:3.2.2.-) rbh
A/G-specific DNA-adenine glycosylase {ECO:0000313|EMBL:ABD25405.1}; EC=3.2.2.- {ECO:0000313|EMBL:ABD25405.1};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
A/G-specific DNA-adenine glycosylase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9R8_NOVAD rbh
S12_scaffold_96_curated_6
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5667..6254
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9R9_NOVAD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD25404.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_96_curated_7
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6254..6991
DNA (738bp) protein (246aa)
Protein-disulfide isomerase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9S0_NOVAD rbh
Protein-disulfide isomerase {ECO:0000313|EMBL:KHS48165.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
protein-disulfide isomerase rbh
S12_scaffold_96_curated_8
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7086..7850
DNA (765bp) protein (255aa)
Protein-disulfide isomerase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9S2_NOVAD rbh
protein-disulfide isomerase rbh
Protein-disulfide isomerase {ECO:0000313|EMBL:ABD25401.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_96_curated_9
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7875..11315
DNA (3441bp) protein (1147aa)
Chromosome partition protein Smc n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9S3_NOVAD rbh
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
chromosome segregation protein SMC rbh
S12_scaffold_96_curated_10
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11327..11767)
DNA (441bp) protein (147aa)
Transcriptional regulator, MerR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9S4_NOVAD
MerR family transcriptional regulator
MerR family transcriptional regulator {ECO:0000313|EMBL:KHS48162.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
S12_scaffold_96_curated_11
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11871..12794)
DNA (924bp) protein (308aa)
ubiA; 4-hydroxybenzoate polyprenyltransferase (EC:2.5.1.-) rbh
4-hydroxybenzoate octaprenyltransferase {ECO:0000256|SAAS:SAAS00188627}; EC=2.5.1.- {ECO:0000256|SAAS:SAAS00188633};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
4-hydroxybenzoate polyprenyltransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B39AD5 rbh
S12_scaffold_96_curated_12
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12842..13600
DNA (759bp) protein (253aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Ribosomal RNA small subunit methyltransferase E n=2 Tax=Sphingomonas aromaticivorans RepID=Q2G9S8_NOVAD rbh
16S ribosomal RNA methyltransferase RsmE rbh
S12_scaffold_96_curated_13
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13653..15026
DNA (1374bp) protein (458aa)
Glutamate--cysteine ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9S9_NOVAD rbh
glutamate--cysteine ligase rbh
Glutamate--cysteine ligase {ECO:0000313|EMBL:ABD25394.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_96_curated_14
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15049..16383)
DNA (1335bp) protein (445aa)
Isoprenylcysteine carboxyl methyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9T3_NOVAD rbh
isoprenylcysteine carboxyl methyltransferase rbh
Isoprenylcysteine carboxyl methyltransferase {ECO:0000313|EMBL:ABD25390.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_96_curated_15
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16425..17771)
DNA (1347bp) protein (449aa)
Pyrrolo-quinoline quinone n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9T4_NOVAD rbh
Pyrrolo-quinoline quinone rbh
Pyrrolo-quinoline quinone {ECO:0000313|EMBL:ABD25389.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_96_curated_16
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17788..18546)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9T5_NOVAD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD25388.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_96_curated_17
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18690..19163)
DNA (474bp) protein (158aa)
17 kDa surface antigen n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9U1_NOVAD
17 kDa surface antigen
17 kDa surface antigen {ECO:0000313|EMBL:ABD25382.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_96_curated_18
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19402..20301
DNA (900bp) protein (300aa)
RarD protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9U2_NOVAD rbh
rarD protein rbh
RarD protein {ECO:0000313|EMBL:ABD25381.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_96_curated_19
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20317..21351)
DNA (1035bp) protein (345aa)
dihydroorotase (EC:3.5.2.3) rbh
Dihydroorotase {ECO:0000255|HAMAP-Rule:MF_00219}; Short=DHOase {ECO:0000255|HAMAP-Rule:MF_00219};; EC=3.5.2.3 {ECO:0000255|HAMAP-Rule:MF_00219};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Dihydroorotase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=PYRC_NOVAD rbh
S12_scaffold_96_curated_20
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21390..22115
DNA (726bp) protein (242aa)
Aminomethyl transferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9U4_NOVAD rbh
glycine cleavage system protein T rbh
Aminomethyl transferase {ECO:0000313|EMBL:ABD25379.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_96_curated_21
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22099..22653)
DNA (555bp) protein (185aa)
Transcriptional regulator, TetR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9U5_NOVAD rbh
TetR family transcriptional regulator rbh
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABD25378.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_96_curated_22
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22721..23614
DNA (894bp) protein (298aa)
FF domain protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9U6_NOVAD rbh
FF domain-containing protein rbh
FF domain protein {ECO:0000313|EMBL:ABD25377.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_96_curated_23
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23627..24202)
DNA (576bp) protein (192aa)
GCN5-related N-acetyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9U7_NOVAD
GCN5-like N-acetyltransferase {ECO:0000313|EMBL:KHS48141.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
GCN5-like N-acetyltransferase
S12_scaffold_96_curated_24
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(24431..24700)
DNA (270bp) protein (90aa)
50S ribosomal protein L27 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RL27_NOVAD
rpmA; 50S ribosomal protein L27
50S ribosomal protein L27 {ECO:0000255|HAMAP-Rule:MF_00539}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_96_curated_25
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(24722..25018)
DNA (297bp) protein (99aa)
50S ribosomal protein L21 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RL21_NOVAD
rplU; 50S ribosomal protein L21
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
S12_scaffold_96_curated_26
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25281..25835
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9V0_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:KHS48138.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
S12_scaffold_96_curated_27
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25844..26287)
DNA (444bp) protein (148aa)
Molybdopterin synthase subunit MoaE n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9V1_NOVAD
Molybdopterin synthase subunit MoaE {ECO:0000313|EMBL:KHS48136.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
molybdopterin synthase subunit MoaE
S12_scaffold_96_curated_28
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26289..26525)
DNA (237bp) protein (79aa)
Molybdopterin synthase subunit MoaD n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9V2_NOVAD
Sulfur transfer protein ThiS {ECO:0000313|EMBL:KHS48135.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
sulfur transfer protein ThiS
S12_scaffold_96_curated_29
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26533..27453)
DNA (921bp) protein (307aa)
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_01225}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Cyclic pyranopterin monophosphate synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9V3_NOVAD rbh
GTP cyclohydrolase subunit MoaA rbh
S12_scaffold_96_curated_30
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27579..28343)
DNA (765bp) protein (255aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9V4_NOVAD rbh
short-chain dehydrogenase/reductase SDR rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABD25369.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Displaying items 1-30 of 153 in total

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