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S12_scaffold_414_curated

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_414_curated_1
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..373
DNA (372bp) protein (124aa)
OmpA/MotB n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3K4_NOVAD
OmpA/MotB
OmpA/MotB {ECO:0000313|EMBL:ABD27569.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_414_curated_2
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(542..2137)
DNA (1596bp) protein (532aa)
Major facilitator superfamily MFS_1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3K2_NOVAD rbh
major facilitator transporter rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABD27571.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_414_curated_3
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2106..2741)
DNA (636bp) protein (212aa)
7-cyano-7-deazaguanine synthase {ECO:0000255|HAMAP-Rule:MF_01633}; EC=6.3.4.20 {ECO:0000255|HAMAP-Rule:MF_01633};; 7-cyano-7-carbaguanine synthase {ECO:0000255|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000255|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000255|HAMAP-Rule:MF_01633}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
7-cyano-7-deazaguanine synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=QUEC_NOVAD rbh
ExsB rbh
S12_scaffold_414_curated_4
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2879..3307)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3K0_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:KHS48033.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
S12_scaffold_414_curated_5
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3454..4356)
DNA (903bp) protein (301aa)
Hsp33 protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3J9_NOVAD rbh
Hsp33 protein rbh
33 kDa chaperonin {ECO:0000256|SAAS:SAAS00038673}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_414_curated_6
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4369..5304)
DNA (936bp) protein (312aa)
ornithine carbamoyltransferase (EC:2.1.3.3) rbh
Ornithine carbamoyltransferase {ECO:0000255|HAMAP-Rule:MF_01109}; Short=OTCase {ECO:0000255|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000255|HAMAP-Rule:MF_01109};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Ornithine carbamoyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=OTC_NOVAD rbh
S12_scaffold_414_curated_7
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5301..6494)
DNA (1194bp) protein (398aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
argD; acetylornithine transaminase (EC:2.6.1.11) rbh
Acetylornithine aminotransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3J7_NOVAD rbh
S12_scaffold_414_curated_8
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6686..7426)
DNA (741bp) protein (247aa)
Cold-shock DNA-binding protein family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3J6_NOVAD rbh
cold-shock DNA-binding protein family protein rbh
Cold-shock DNA-binding protein family {ECO:0000313|EMBL:ABD27577.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_414_curated_9
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7723..8157
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3J5_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD27578.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_414_curated_10
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8175..8633
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3J4_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD27579.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_414_curated_11
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8630..9523
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3J3_NOVAD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD27580.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_414_curated_12
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9510..10121)
DNA (612bp) protein (204aa)
Transcriptional regulator, TetR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3J2_NOVAD rbh
TetR family transcriptional regulator {ECO:0000313|EMBL:KHS44142.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
TetR family transcriptional regulator rbh
S12_scaffold_414_curated_13
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10307..12640
DNA (2334bp) protein (778aa)
TonB-dependent receptor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3J1_NOVAD rbh
TonB-dependent receptor {ECO:0000313|EMBL:ABD27582.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
TonB-dependent receptor rbh
S12_scaffold_414_curated_14
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12768..14072)
DNA (1305bp) protein (435aa)
UDP-glucose/GDP-mannose dehydrogenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3J0_NOVAD rbh
UDP-glucose/GDP-mannose dehydrogenase rbh
UDP-glucose/GDP-mannose dehydrogenase {ECO:0000313|EMBL:ABD27583.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_414_curated_15
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14062..15222)
DNA (1161bp) protein (387aa)
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14) rbh
UDP-N-Acetylglucosamine 2-epimerase {ECO:0000313|EMBL:ABD27584.1}; EC=5.1.3.14 {ECO:0000313|EMBL:ABD27584.1};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3I9_NOVAD rbh
S12_scaffold_414_curated_16
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15353..16681
DNA (1329bp) protein (443aa)
UDP-glucose/GDP-mannose dehydrogenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3I8_NOVAD rbh
UDP-glucose/GDP-mannose dehydrogenase rbh
UDP-glucose/GDP-mannose dehydrogenase {ECO:0000313|EMBL:ABD27585.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_414_curated_17
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16867..17865
DNA (999bp) protein (333aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3I7_NOVAD rbh
NAD-dependent epimerase/dehydratase rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ABD27586.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_414_curated_18
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17932..18723)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B368A8
Uncharacterized protein {ECO:0000313|EMBL:KHS44144.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
S12_scaffold_414_curated_19
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18783..19775)
DNA (993bp) protein (331aa)
Porphyromonas-type peptidyl-arginine deiminase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3I5_NOVAD rbh
peptidyl-arginine deiminase rbh
Porphyromonas-type peptidyl-arginine deiminase {ECO:0000313|EMBL:ABD27588.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_414_curated_20
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19927..22638
DNA (2712bp) protein (904aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|SAAS:SAAS00086160}; EC=2.7.7.42 {ECO:0000256|SAAS:SAAS00086164};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
glutamate-ammonia-ligase adenylyltransferase (EC:2.7.7.42) rbh
Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3I4_NOVAD rbh
S12_scaffold_414_curated_21
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22638..23111
DNA (474bp) protein (158aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3I3_NOVAD
alkyl hydroperoxide reductase
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:ABD27590.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_414_curated_22
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23156..23950
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3I2_NOVAD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD27591.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_414_curated_23
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24133..24846
DNA (714bp) protein (238aa)
Peptidase M23B n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3I1_NOVAD rbh
peptidase M23B rbh
Peptidase M23B {ECO:0000313|EMBL:ABD27592.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_414_curated_24
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25056..25928
DNA (873bp) protein (291aa)
Putative AraC family transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MML1_RHIL3 rbh
AraC family transcriptional regulator rbh
Putative AraC family transcriptional regulator {ECO:0000313|EMBL:CAK05791.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
S12_scaffold_414_curated_25
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(26003..26536)
DNA (534bp) protein (178aa)
30S ribosomal protein S9 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G353_NOVAD rbh
rpsI; 30S ribosomal protein S9 rbh
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_414_curated_26
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(26533..27012)
DNA (480bp) protein (160aa)
50S ribosomal protein L13 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B483D7 rbh
rplM; 50S ribosomal protein L13 rbh
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|SAAS:SAAS00083943}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_414_curated_27
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27153..27479)
DNA (327bp) protein (109aa)
Periplasmic divalent cation tolerance protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G351_NOVAD
Periplasmic divalent cation tolerance protein {ECO:0000313|EMBL:KHS47670.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
periplasmic divalent cation tolerance protein
S12_scaffold_414_curated_28
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27476..28666)
DNA (1191bp) protein (397aa)
Heme A synthase {ECO:0000255|HAMAP-Rule:MF_01665}; Short=HAS {ECO:0000255|HAMAP-Rule:MF_01665};; EC=1.3.-.- {ECO:0000255|HAMAP-Rule:MF_01665};; Cytochrome aa3-controlling protein {ECO:0000255|HAMAP-Rule:MF_01665}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Heme A synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=CTAA_NOVAD rbh
cytochrome oxidase assembly rbh
S12_scaffold_414_curated_29
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28727..29107
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G349_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD27724.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_414_curated_30
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29178..30170
DNA (993bp) protein (331aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
bifunctional sulfur carrier protein/thiazole synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=UPI000038A8D8 rbh
bifunctional sulfur carrier protein/thiazole synthase rbh
Displaying items 1-30 of 45 in total

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