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S12_scaffold_1330_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_1330_curated_1
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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185..934
DNA (750bp) protein (250aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8I5Y1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KJF65222.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
oppB; oligopeptide transporter permease
S12_scaffold_1330_curated_2
Rhizobium lupini, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1486..2133
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003804894
Uncharacterized protein {ECO:0000313|EMBL:EKJ95487.1}; TaxID=1229491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium lupini HPC(L).;"
hypothetical protein
S12_scaffold_1330_curated_3
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2222..3187)
DNA (966bp) protein (322aa)
Beta-lactamase domain-containing protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y5D7_9RHIZ rbh
Beta-lactamase domain-containing protein {ECO:0000313|EMBL:EHH12977.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
beta-lactamase domain-containing protein
S12_scaffold_1330_curated_4
Mesorhizobium sp. LSHC412B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3545..3742
DNA (198bp) protein (66aa)
UPI0003CF30D9 related cluster n=1 Tax=unknown RepID=UPI0003CF30D9
Uncharacterized protein {ECO:0000313|EMBL:ESX84377.1}; TaxID=1287285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC412B00.;"
S12_scaffold_1330_curated_5
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3739..4107)
DNA (369bp) protein (123aa)
UPI0003CEBA82 related cluster n=1 Tax=unknown RepID=UPI0003CEBA82
transposase
Transposase {ECO:0000313|EMBL:BAB52488.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
S12_scaffold_1330_curated_6
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4268..4780
DNA (513bp) protein (171aa)
Transposase IS401 n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IY65_9SPHN
Transposase IS401 {ECO:0000313|EMBL:EQB33735.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
integrase catalytic subunit
S12_scaffold_1330_curated_7
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4764..4991)
DNA (228bp) protein (76aa)
Possible transposase n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YMN8_MOBAS
Possible transposase {ECO:0000313|EMBL:EAS51343.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
S12_scaffold_1330_curated_8
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5799..6833)
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036971A7 rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EXL09470.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
oligopeptide/dipeptide ABC transporter ATPase rbh
S12_scaffold_1330_curated_9
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6830..7843)
DNA (1014bp) protein (338aa)
peptide ABC transporter substrate-binding protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00035ED608 rbh
Dipeptide transport ATP-binding protein DppD {ECO:0000313|EMBL:EKE75079.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
Oligopeptide transport ATP-binding protein OppD
S12_scaffold_1330_curated_10
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7843..8754)
DNA (912bp) protein (304aa)
Probable ABC-transporter permease n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9HW48_BORPD rbh
Uncharacterized protein {ECO:0000313|EMBL:EXL09468.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
ABC transporter permease rbh
S12_scaffold_1330_curated_11
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8756..9736)
DNA (981bp) protein (327aa)
Binding-protein-dependent transport systems inner membrane component n=2 Tax=Thauera RepID=C4KDH8_THASP rbh
ABC transporter permease {ECO:0000313|EMBL:EXL09467.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
binding-protein-dependent transporters inner membrane component rbh
S12_scaffold_1330_curated_12
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9811..10428)
DNA (618bp) protein (206aa)
cysteine dioxygenase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B2F43C
Cysteine dioxygenase {ECO:0000313|EMBL:EZQ13658.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
S12_scaffold_1330_curated_13
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10425..11507)
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000367735F
Peptidase {ECO:0000313|EMBL:EZQ13657.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
multidrug resistance protein B
S12_scaffold_1330_curated_14
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11641..13209)
DNA (1569bp) protein (523aa)
ABC transporter, substrate-binding protein n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KTR3_BORA1 rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EZQ13656.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
ABC transporter substrate-binding protein rbh
S12_scaffold_1330_curated_15
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13441..14472
DNA (1032bp) protein (344aa)
Regulatory protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HXG0_AZOC5 rbh
Transcriptional regulator {ECO:0000313|EMBL:EXL09463.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
araC; regulatory protein rbh
S12_scaffold_1330_curated_16
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14581..15831
DNA (1251bp) protein (417aa)
soxB; sarcosine oxidase subunit beta (EC:1.5.3.1) rbh
Sarcosine oxidase, beta subunit n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ED98_BRASB rbh
Sarcosine oxidase subunit beta {ECO:0000313|EMBL:EXL09462.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
S12_scaffold_1330_curated_17
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15841..16134
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000360F8C6
Sarcosine oxidase subunit delta {ECO:0000313|EMBL:EXL09461.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
sarcosine oxidase subunit delta
S12_scaffold_1330_curated_18
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16137..17615
DNA (1479bp) protein (493aa)
soxA; sarcosine oxidase subunit alpha (EC:1.5.3.1) rbh
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036C99A9 rbh
Sarcosine oxidase subunit alpha {ECO:0000313|EMBL:EZQ13652.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
Displaying 18 items

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