ggKbase home page

S12_scaffold_1694_curated

Search features with annotation key words

Displaying 12 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_1694_curated_1
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..887)
DNA (885bp) protein (295aa)
3-isopropylmalate dehydratase large subunit {ECO:0000255|HAMAP-Rule:MF_01026}; EC=4.2.1.33 {ECO:0000255|HAMAP-Rule:MF_01026};; Alpha-IPM isomerase {ECO:0000255|HAMAP-Rule:MF_01026}; Short=IPMI {ECO:0000255|HAMAP-Rule:MF_01026};; Isopropylmalate isomerase {ECO:0000255|HAMAP-Rule:MF_01026}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
3-isopropylmalate dehydratase large subunit n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=LEUC_PARL1 rbh
3-isopropylmalate dehydratase large subunit rbh
S12_scaffold_1694_curated_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1045..1437)
DNA (393bp) protein (131aa)
50S ribosomal protein L19 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P5C6_9BRAD
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
50S ribosomal protein L19
S12_scaffold_1694_curated_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1550..2266)
DNA (717bp) protein (239aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HT08_PARL1 rbh
tRNA (guanine-N1)-methyltransferase rbh
S12_scaffold_1694_curated_4
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2259..2804)
DNA (546bp) protein (182aa)
Ribosome maturation factor RimM n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=RIMM_PARL1
rimM; 16S rRNA-processing protein RimM
Ribosome maturation factor RimM {ECO:0000255|HAMAP-Rule:MF_00014}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S12_scaffold_1694_curated_5
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2822..3250)
DNA (429bp) protein (143aa)
30S ribosomal protein S16 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=RS16_PARL1
30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000255|HAMAP-Rule:MF_00385}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S12_scaffold_1694_curated_6
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3324..4853)
DNA (1530bp) protein (510aa)
Signal recognition particle protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HT05_PARL1 rbh
signal recognition particle protein rbh
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S12_scaffold_1694_curated_7
unknown

Not on your lists

5444..5788
DNA (345bp) protein (115aa)

This feature has no annotations

S12_scaffold_1694_curated_8
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5799..6296)
DNA (498bp) protein (166aa)
Putative competence-damaged inducible protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RHF6_PHEZH
competence-damaged inducible protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
S12_scaffold_1694_curated_9
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6442..7326
DNA (885bp) protein (295aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Diaminopimelate epimerase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HT02_PARL1 rbh
diaminopimelate epimerase rbh
S12_scaffold_1694_curated_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7729..8019
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IEY8_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF85477.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
S12_scaffold_1694_curated_11
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8195..9001)
DNA (807bp) protein (269aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPH9_9SPHN
2-pyrone-4,6-dicarboxylate lactonase
2-pyrone-4,6-dicarboxylate lactonase {ECO:0000313|EMBL:CDN57417.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
S12_scaffold_1694_curated_12
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8998..9432)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q125N7_POLSJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE45755.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Displaying 12 items

View Taxonomy