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S12_Rhizobiales_64_8_curated

FUEL_CELL_S12_Rhizobiales_63_1
In projects: FUEL_CELL_S12  |  fuel_cell_curated

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: FUEL_CELL_S12_Rhizobiales_unk_64_8 Manually curated genome
Original version: FUEL_CELL_S12_Rhizobiales_unk_64_8

Properties

Avg. coverage: 1.00 Longest contig: 19.65 Kbp Bin length: 2.99 Mbp GC content: 62.94 %
Contigs count: 794 Features count: 3748 rRNAs count: 0 tRNAs count: 24

Genome completeness

partial RP 41 / 55 MC: 9 BSCG 38 / 51 MC: 9 ASCG 7 / 38 MC: 2
Displaying items 151-200 of 794 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
S12_scaffold_3208_curated
Order: Rhizobiales (50%)
6 5181 bp 62.05 1.00 80.35
S12_scaffold_3719_curated
Order: Rhizobiales (50%)
6 4565 bp 63.11 1.00 81.36
S12_scaffold_4152_curated
Order: Rhizobiales (66.67%)
6 4146 bp 66.81 1.00 86.11
S12_scaffold_2778_curated
Order: Rhizobiales (66.67%)
6 5815 bp 64.49 1.00 86.52
S12_scaffold_5206_curated
Order: Rhizobiales (100%)
6 4075 bp 65.23 1.00 81.35
S12_scaffold_5205_curated
Order: Rhizobiales (50%)
6 3389 bp 63.74 1.00 87.02
S12_scaffold_7972_curated
Species: Parvibaculum lavamentivorans (50%)
6 5208 bp 56.97 1.00 86.00
S12_scaffold_4372_curated
Order: Rhizobiales (66.67%)
6 3971 bp 64.54 1.00 84.16
S12_scaffold_2168_curated
Order: Rhizobiales (50%)
6 7324 bp 63.50 1.00 78.48
S12_scaffold_3439_curated
Order: Rhizobiales (50%)
6 4824 bp 53.42 1.00 78.42
S12_scaffold_3484_curated
Order: Rhizobiales (66.67%)
6 4829 bp 59.14 1.00 87.78
S12_scaffold_3362_curated
Order: Rhizobiales (100%)
6 5611 bp 64.91 1.00 89.24
S12_scaffold_2995_curated
Order: Rhizobiales (50%)
6 5560 bp 61.91 1.00 99.28
S12_scaffold_5448_curated
Order: Rhizobiales (83.33%)
6 5601 bp 63.81 1.00 80.34
S12_scaffold_3744_curated
Order: Rhizobiales (83.33%)
6 4515 bp 64.61 1.00 77.08
S12_scaffold_2288_curated
Order: Rhizobiales (66.67%)
6 6989 bp 63.97 1.00 85.46
S12_scaffold_5076_curated
Order: Rhizobiales (50%)
6 5283 bp 63.24 1.00 81.37
S12_scaffold_6268_curated
Order: Rhizobiales (50%)
6 2905 bp 62.07 1.00 84.17
S12_scaffold_3670_curated
Order: Rhizobiales (50%)
6 4595 bp 55.13 1.00 83.96
S12_scaffold_4304_curated
Order: Rhizobiales (50%)
6 5400 bp 51.83 1.00 59.72
S12_scaffold_4001_curated
Genus: Microvirga (50%)
6 4533 bp 64.09 1.00 80.68
S12_scaffold_4958_curated
Order: Rhizobiales (50%)
6 3423 bp 66.14 1.00 92.43
S12_scaffold_2949_curated
Order: Rhizobiales (50%)
6 5647 bp 61.20 1.00 93.29
S12_scaffold_3883_curated
Order: Rhizobiales (50%)
6 4247 bp 64.28 1.00 76.29
S12_scaffold_1811_curated
Order: Rhizobiales (50%)
6 8822 bp 69.07 1.00 91.24
S12_scaffold_3222_curated
Order: Rhizobiales (50%)
6 5065 bp 57.04 1.00 83.49
S12_scaffold_3349_curated
Order: Rhizobiales (66.67%)
6 4989 bp 64.42 1.00 99.34
S12_scaffold_3535_curated
Order: Rhizobiales (83.33%)
6 4773 bp 64.22 1.00 80.10
S12_scaffold_3619_curated
Order: Rhizobiales (83.33%)
6 4684 bp 59.93 1.00 68.85
S12_scaffold_5854_curated
Order: Rhizobiales (50%)
6 4835 bp 61.53 1.00 89.10
S12_scaffold_2831_curated
Class: Alphaproteobacteria (100%)
6 5926 bp 68.48 1.00 87.07
S12_scaffold_2953_curated
Order: Rhizobiales (66.67%)
6 5637 bp 66.29 1.00 87.60
S12_scaffold_2837_curated
Order: Rhizobiales (66.67%)
6 5658 bp 59.76 1.00 84.84
S12_scaffold_4615_curated
Class: Gammaproteobacteria (50%)
6 3703 bp 56.85 1.00 88.55
S12_scaffold_3783_curated
Phylum: Proteobacteria (83.33%)
6 4485 bp 60.80 1.00 85.82
S12_scaffold_3521_curated
Order: Rhizobiales (100%)
6 4747 bp 62.63 1.00 79.50
S12_scaffold_3522_curated
Order: Rhizobiales (83.33%)
6 4808 bp 67.57 1.00 86.11
S12_scaffold_6517_curated
Order: Rhizobiales (66.67%)
6 2796 bp 62.98 1.00 90.77
S12_scaffold_5024_curated
Order: Rhizobiales (66.67%)
6 5858 bp 62.26 1.00 74.05
S12_scaffold_2782_curated
Order: Rhizobiales (50%)
6 5915 bp 59.10 1.00 80.64
S12_scaffold_6778_curated
Order: Rhizobiales (100%)
6 2700 bp 62.22 1.00 78.67
S12_scaffold_3090_curated
Order: Rhizobiales (50%)
6 5139 bp 60.38 1.00 85.17
S12_scaffold_2609_curated
Class: Alphaproteobacteria (50%)
6 6129 bp 65.74 1.00 98.48
S12_scaffold_7579_curated
Order: Rhizobiales (83.33%)
6 4573 bp 62.78 1.00 92.63
S12_scaffold_4703_curated
Order: Rhizobiales (83.33%)
6 5604 bp 65.58 1.00 90.42
S12_scaffold_5149_curated
Order: Rhizobiales (66.67%)
6 5060 bp 62.47 1.00 75.12
S12_scaffold_1998_curated
Order: Rhizobiales (83.33%)
6 7992 bp 64.94 1.00 88.70
S12_scaffold_4686_curated
Order: Rhizobiales (50%)
6 3617 bp 68.62 1.00 97.71
S12_scaffold_7255_curated
Order: Rhizobiales (50%)
6 4587 bp 57.25 1.00 54.87
S12_scaffold_3694_curated
Order: Rhizobiales (66.67%)
6 4494 bp 62.22 1.00 81.71
Displaying items 151-200 of 794 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.