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S12_scaffold_222_curated

Search features with annotation key words

Displaying items 1-30 of 80 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_222_curated_1
unknown

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1..72
DNA (72bp) protein (24aa)

This feature has no annotations

S12_scaffold_222_curated_2
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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184..1503
DNA (1320bp) protein (440aa)
Major facilitator superfamily MFS_1 n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12DF2_POLSJ rbh
major facilitator transporter rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABE43440.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
S12_scaffold_222_curated_3
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1566..2753
DNA (1188bp) protein (396aa)
L-rhamnonate dehydratase; Short=RhamD;; EC=4.2.1.90;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
L-rhamnonate dehydratase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=RHMD_POLSJ rbh
mandelate racemase/muconate lactonizing protein rbh
S12_scaffold_222_curated_4
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2786..4084)
DNA (1299bp) protein (433aa)
Porin n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0M6_STAND rbh
porin rbh
Porin {ECO:0000313|EMBL:ADH91347.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_222_curated_5
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4134..5915)
DNA (1782bp) protein (594aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003670910 rbh
Cl-channel voltage-gated family protein rbh
Cl-channel voltage-gated family protein {ECO:0000313|EMBL:ADH88146.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_222_curated_6
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5970..7289)
DNA (1320bp) protein (440aa)
UPI0003CFB770 related cluster n=1 Tax=unknown RepID=UPI0003CFB770 rbh
MFS permease rbh
Arabinose ABC transporter permease {ECO:0000313|EMBL:ESZ24905.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
S12_scaffold_222_curated_7
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7481..8683
DNA (1203bp) protein (401aa)
Ubiquinol oxidase, subunit II n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GTJ7_9BRAD rbh
Ubiquinol oxidase, subunit II {ECO:0000313|EMBL:ERF80912.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
cytochrome o ubiquinol oxidase subunit II rbh
S12_scaffold_222_curated_8
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8692..10707
DNA (2016bp) protein (672aa)
Cytochrome o ubiquinol oxidase, subunit I n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H8W2_9BRAD rbh
Cytochrome o ubiquinol oxidase, subunit I {ECO:0000313|EMBL:ERF80911.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
cytochrome o ubiquinol oxidase subunit I rbh
S12_scaffold_222_curated_9
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10704..11330
DNA (627bp) protein (209aa)
Cytochrome o ubiquinol oxidase subunit III n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I7A9_AZOC5 rbh
cytochrome o ubiquinol oxidase subunit III rbh
Cytochrome o ubiquinol oxidase subunit III {ECO:0000313|EMBL:BAF88098.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
S12_scaffold_222_curated_10
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11327..11740
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00031F4634
Cytochrome o ubiquinol oxidase subunit IV {ECO:0000313|EMBL:AID28270.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
cytochrome o ubiquinol oxidase subunit IV
S12_scaffold_222_curated_11
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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11737..12486
DNA (750bp) protein (250aa)
Putative SURF1 family protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AUE2_AZOBR
putative SURF1 family protein
Putative SURF1 family protein {ECO:0000313|EMBL:CCD01551.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
S12_scaffold_222_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12658..13770
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI000360EFFF rbh
TRAP dicarboxylate transporter-DctP subunit {ECO:0000313|EMBL:EYR83946.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
TRAP dicarboxylate transporter subunit DctP rbh
S12_scaffold_222_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13800..16484
DNA (2685bp) protein (895aa)
Diguanylate cyclase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLE8_9RHIZ rbh
Diguanylate cyclase {ECO:0000313|EMBL:EYR83945.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase rbh
S12_scaffold_222_curated_14
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16543..17784)
DNA (1242bp) protein (414aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0R6_STAND rbh
L-carnitine dehydratase/bile acid-inducible protein F rbh
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ADH91387.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_222_curated_15
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17959..19581
DNA (1623bp) protein (541aa)
ABC transporter related protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AA68_STAND rbh
ABC transporter rbh
ABC transporter related protein {ECO:0000313|EMBL:ADH90855.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_222_curated_16
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19782..20354
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037BB9BA
Invasion associated locus B family protein {ECO:0000313|EMBL:ADH91384.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
invasion associated locus B family protein
S12_scaffold_222_curated_17
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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20465..21115
DNA (651bp) protein (217aa)
isochorismatase hydrolase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000287C010
Nicotinamidase {ECO:0000313|EMBL:GAM02661.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
isochorismatase
S12_scaffold_222_curated_18
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21160..22308)
DNA (1149bp) protein (383aa)
L-lactate dehydrogenase (cytochrome) (EC:1.1.2.3) rbh
L-lactate dehydrogenase (Cytochrome) {ECO:0000313|EMBL:ADH90652.1}; EC=1.1.2.3 {ECO:0000313|EMBL:ADH90652.1};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
L-lactate dehydrogenase (Cytochrome) n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A990_STAND rbh
S12_scaffold_222_curated_19
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(22437..23729)
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Rhizobium loti RepID=M5AMN7_RHILI rbh
Uncharacterized protein {ECO:0000313|EMBL:BAN10153.1}; TaxID=381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (Mesorhizobium loti).;"
hypothetical protein rbh
S12_scaffold_222_curated_20
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(23726..24748)
DNA (1023bp) protein (341aa)
Alcohol dehydrogenase n=3 Tax=Ochrobactrum intermedium RepID=C4WKY2_9RHIZ rbh
Alcohol dehydrogenase {ECO:0000313|EMBL:EEQ93516.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
alcohol dehydrogenase rbh
S12_scaffold_222_curated_21
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24752..26077)
DNA (1326bp) protein (442aa)
Histidinol dehydrogenase {ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|PIRNR:PIRNR000099};; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
hisD; histidinol dehydrogenase (EC:1.1.1.23)
histidinol dehydrogenase n=1 Tax=Ochrobactrum anthropi RepID=UPI00028922DA rbh
S12_scaffold_222_curated_22
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(26194..26964)
DNA (771bp) protein (257aa)
2-deoxy-D-gluconate 3-dehydrogenase {ECO:0000313|EMBL:CDX44425.1}; EC=1.1.1.125 {ECO:0000313|EMBL:CDX44425.1};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
Probable dehydrogenase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q987C7_RHILO rbh
dehydrogenase rbh
S12_scaffold_222_curated_23
Pseudomonas sp. CF161, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(26989..27834)
DNA (846bp) protein (282aa)
ABC transporter-like protein n=1 Tax=Pseudomonas sp. CF161 RepID=S6IR26_9PSED rbh
Uncharacterized ABC transporter ATP-binding protein
ABC transporter-like protein {ECO:0000313|EMBL:EPL06015.1}; TaxID=911241 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. CF161.;"
S12_scaffold_222_curated_24
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(27851..28654)
DNA (804bp) protein (268aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=3 Tax=Pseudomonas RepID=J2RBX9_9PSED rbh
Nitrate transport permease nrtB {ECO:0000313|EMBL:KIF57044.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
binding-protein dependent transport system inner membrane protein rbh
S12_scaffold_222_curated_25
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(28728..29714)
DNA (987bp) protein (329aa)
taurine ABC transporter substrate-binding protein n=1 Tax=Pseudomonas pelagia RepID=UPI00039A451E rbh
Taurine ABC transporter substrate-binding protein {ECO:0000313|EMBL:EZH83941.1}; TaxID=1453503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes AD6.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component rbh
S12_scaffold_222_curated_26
unknown

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comp(29923..30123)
DNA (201bp) protein (67aa)

This feature has no annotations

S12_scaffold_222_curated_27
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(30120..30680)
DNA (561bp) protein (187aa)
FMN reductase (NADH) RutF {ECO:0000255|HAMAP-Rule:MF_00833}; EC=1.5.1.42 {ECO:0000255|HAMAP-Rule:MF_00833};; FMN reductase {ECO:0000255|HAMAP-Rule:MF_00833}; NADH-flavin reductase RutF {ECO:0000255|HAMAP-Rule:MF_00833}; NADH:flavin oxidoreductase {ECO:0000255|HAMAP-Rule:MF_00833}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
FMN reductase (NADH) RutF n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=RUTF_STAND
flavin reductase
S12_scaffold_222_curated_28
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30757..32070)
DNA (1314bp) protein (438aa)
Dibenzothiophene desulfurization enzyme A n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A988_STAND rbh
dibenzothiophene desulfurization enzyme A rbh
Dibenzothiophene desulfurization enzyme A {ECO:0000313|EMBL:ADH90650.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_222_curated_29
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32084..32923)
DNA (840bp) protein (280aa)
lauroyl acyltransferase n=1 Tax=Xanthobacteraceae RepID=UPI0003778A51 rbh
ABC transporter rbh
ABC transporter related protein {ECO:0000313|EMBL:ADH90649.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_222_curated_30
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32924..33742)
DNA (819bp) protein (273aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A986_STAND rbh
binding-protein-dependent transporters inner membrane component rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADH90648.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Displaying items 1-30 of 80 in total

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