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S12_scaffold_100_curated

Search features with annotation key words

Displaying items 1-30 of 193 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_100_curated_1
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1900)
DNA (1899bp) protein (633aa)
Outer membrane autotransporter barrel domain protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VDI8_RHOPX rbh
outer membrane autotransporter barrel domain-containing protein rbh
Tax=BJP_IG2102_Gammaproteobacteria_62_140
S12_scaffold_100_curated_2
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2202..2885
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K0L5_AGRVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM38413.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
S12_scaffold_100_curated_3
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2888..3199
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZIZ5_AZOL4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBS91490.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
S12_scaffold_100_curated_4
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3228..3782
DNA (555bp) protein (185aa)
Putative acetyltransferase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZIZ6_AZOL4
putative acetyltransferase
Putative acetyltransferase {ECO:0000313|EMBL:CBS91491.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
S12_scaffold_100_curated_5
unknown

Not on your lists

4106..7474
DNA (3369bp) protein (1123aa)

This feature has no annotations

S12_scaffold_100_curated_6
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7677..9266
DNA (1590bp) protein (530aa)
gamma-glutamyltransferase (EC:2.3.2.2) rbh
Gamma-glutamyltransferase {ECO:0000313|EMBL:ADH91048.1}; EC=2.3.2.2 {ECO:0000313|EMBL:ADH91048.1};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Gamma-glutamyltransferase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZYS9_STAND rbh
S12_scaffold_100_curated_7
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9195..10760)
DNA (1566bp) protein (522aa)
Major facilitator superfamily MFS_1 n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EK31_METSB rbh
major facilitator superfamily protein rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACK49978.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
S12_scaffold_100_curated_8
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10892..11389)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A1H2_STAND rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADH91397.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_100_curated_9
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11538..12257)
DNA (720bp) protein (240aa)
plasmid partitioning protein ParA n=1 Tax=Xanthobacteraceae RepID=UPI00037D4587 rbh
ROK family protein rbh
ROK family protein {ECO:0000313|EMBL:ADH90944.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_100_curated_10
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12271..14769)
DNA (2499bp) protein (833aa)
glucan 1,4-alpha-glucosidase (EC:3.2.1.3) rbh
Glucan 1,4-alpha-glucosidase {ECO:0000313|EMBL:ADH90943.1}; EC=3.2.1.3 {ECO:0000313|EMBL:ADH90943.1};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Cga n=1 Tax=Xanthobacteraceae RepID=UPI0003719775 rbh
S12_scaffold_100_curated_11
unknown

Not on your lists

comp(15048..15197)
DNA (150bp) protein (50aa)

This feature has no annotations

S12_scaffold_100_curated_12
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15408..16154
DNA (747bp) protein (249aa)
IMP dehydrogenase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I976_AZOC5 rbh
IMP dehydrogenase rbh
IMP dehydrogenase {ECO:0000313|EMBL:BAF88751.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
S12_scaffold_100_curated_13
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16151..17422
DNA (1272bp) protein (424aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A6C1_STAND rbh
integral membrane sensor signal transduction histidine kinase rbh
S12_scaffold_100_curated_14
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17432..18436)
DNA (1005bp) protein (335aa)
AraC family transcriptional regulator n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D68683 rbh
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain {ECO:0000313|EMBL:CDN55201.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
S12_scaffold_100_curated_15
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18433..18996)
DNA (564bp) protein (188aa)
hydrolase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D6EDC8 rbh
Hydrolase {ECO:0000313|EMBL:AKC85563.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
Isochorismatase hydrolase
S12_scaffold_100_curated_16
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19203..20183
DNA (981bp) protein (327aa)
Secretion protein HlyD family protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A352_STAND rbh
secretion protein HlyD rbh
Secretion protein HlyD family protein {ECO:0000313|EMBL:ADH87770.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_100_curated_17
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20186..21187
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A353_STAND rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADH87771.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_100_curated_18
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21196..21528)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A354_STAND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH87772.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_100_curated_19
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21678..24857)
DNA (3180bp) protein (1060aa)
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A355_STAND rbh
hydrophobe/amphiphile efflux-1 (HAE1) family transporter rbh
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family {ECO:0000313|EMBL:ADH87773.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_100_curated_20
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24907..26214)
DNA (1308bp) protein (436aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A356_STAND rbh
RND family efflux transporter MFP subunit rbh
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ADH87774.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_100_curated_21
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26231..27052)
DNA (822bp) protein (274aa)
Alpha/beta hydrolase fold-3 domain protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A357_STAND rbh
alpha/beta hydrolase rbh
Alpha/beta hydrolase fold-3 domain protein {ECO:0000313|EMBL:ADH87775.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_100_curated_22
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27201..28157
DNA (957bp) protein (319aa)
Transcriptional regulator, LysR family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A358_STAND rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADH87776.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_100_curated_23
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28147..28875)
DNA (729bp) protein (243aa)
ABC transporter n=1 Tax=Xanthobacteraceae RepID=UPI0003761ACA rbh
ABC transporter rbh
ABC transporter related protein {ECO:0000313|EMBL:ADH87777.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_100_curated_24
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28853..29512)
DNA (660bp) protein (220aa)
amino acid ABC transporter permease n=1 Tax=Xanthobacteraceae RepID=UPI00036DCA95 rbh
polar amino acid ABC transporter inner membrane subunit rbh
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ADH87778.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_100_curated_25
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29509..30183)
DNA (675bp) protein (225aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A361_STAND rbh
polar amino acid ABC transporter inner membrane subunit rbh
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ADH87779.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_100_curated_26
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30385..31173)
DNA (789bp) protein (263aa)
Extracellular solute-binding protein family 3 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A362_STAND rbh
family 3 extracellular solute-binding protein rbh
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:ADH87780.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_100_curated_27
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31178..31915)
DNA (738bp) protein (246aa)
Transcriptional regulator, GntR family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A363_STAND rbh
GntR family transcriptional regulator rbh
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ADH87781.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_100_curated_28
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32283..34439)
DNA (2157bp) protein (719aa)
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2) rbh
Methylmalonyl-CoA mutase, large subunit {ECO:0000313|EMBL:ADH87782.1}; EC=5.4.99.2 {ECO:0000313|EMBL:ADH87782.1};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Methylmalonyl-CoA mutase, large subunit n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A364_STAND rbh
S12_scaffold_100_curated_29
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34474..34851)
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00035FB250
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS69949.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
S12_scaffold_100_curated_30
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34909..36762)
DNA (1854bp) protein (618aa)
methylmalonyl-CoA mutase (EC:5.4.99.2) rbh
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:ADH87783.1}; EC=5.4.99.2 {ECO:0000313|EMBL:ADH87783.1};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Methylmalonyl-CoA mutase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A365_STAND rbh
Displaying items 1-30 of 193 in total

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