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S13_scaffold_661_curated

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_661_curated_1
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..385)
DNA (384bp) protein (128aa)
hypothetical protein; K06143 inner membrane protein id=5079547 bin=GWF1_Burkholderiales_GWF1_66_17 species=Burkholderia ubonensis genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
inner membrane CreD family protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_661_curated_2
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(492..2012)
DNA (1521bp) protein (507aa)
hypothetical protein id=5079546 bin=GWF1_Burkholderiales_GWF1_66_17 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_661_curated_3
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2407..3846)
DNA (1440bp) protein (480aa)
creC; sensory histidine kinase crec; K07641 two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] id=5079545 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
sensor histidine kinase
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_661_curated_4
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3851..4534)
DNA (684bp) protein (228aa)
creB; winged helix family two component transcriptional regulator; K07663 two-component system, OmpR family, catabolic regulation response regulator CreB id=5079544 bin=GWF1_Burkholderiales_GWF1_66_17 species=Cupriavidus basilensis genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
Two-component response regulator CreB
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_661_curated_5
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4589..4990)
DNA (402bp) protein (134aa)
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_661_curated_6
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5000..5878)
DNA (879bp) protein (293aa)
shikimate/quinate 5-dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25] id=5079543 bin=GWF1_Burkholderiales_GWF1_66_17 species=Azotobacter vinelandii genus=Azotobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
Shikimate/quinate 5-dehydrogenase
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_661_curated_7
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5935..6954)
DNA (1020bp) protein (340aa)
TRAP dicarboxylate transporter subunit DctP id=5079542 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hylemonella gracilis genus=Hylemonella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
TRAP dicarboxylate transporter subunit DctP rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_661_curated_8
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6988..8280)
DNA (1293bp) protein (431aa)
TRAP dicarboxylate transporter subunit DctM id=1262100 bin=GWE1_Burkholderiales_65_30 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
TRAP dicarboxylate transporter subunit DctM rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_661_curated_9
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8285..8788)
DNA (504bp) protein (168aa)
tripartite ATP-independent periplasmic transporter DctQ id=5079540 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
tripartite ATP-independent periplasmic transporter DctQ
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_661_curated_10
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8850..9383)
DNA (534bp) protein (178aa)
carbohydrate kinase; K00851 gluconokinase [EC:2.7.1.12] id=5079539 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
carbohydrate kinase
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_661_curated_11
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9762..10550
DNA (789bp) protein (263aa)
periplasmic-binding protein/LacI transcriptional regulator; K06145 LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor id=5079538 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
LacI family transcriptional regulator rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_661_curated_12
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10741..12048
DNA (1308bp) protein (436aa)
extracellular solute-binding protein; K10227 sorbitol/mannitol transport system substrate-binding protein id=5079537 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
extracellular solute-binding protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_661_curated_13
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12232..13092
DNA (861bp) protein (287aa)
binding-protein-dependent transport system inner membrane protein; K10228 sorbitol/mannitol transport system permease protein id=5079536 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
binding-protein-dependent transport system inner membrane protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_661_curated_14
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13100..13930
DNA (831bp) protein (277aa)
binding-protein-dependent transport systems inner membrane component; K10229 sorbitol/mannitol transport system permease protein id=5079535 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
binding-protein-dependent transport systems inner membrane component rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_661_curated_15
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14070..15113
DNA (1044bp) protein (348aa)
ATPase component of ABC-type sugar transporter id=1262093 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
ABC transporter-like protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_661_curated_16
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15142..15876
DNA (735bp) protein (245aa)
rbtD; ribitol 2-dehydrogenase (RDH) (EC:1.1.1.56); K00039 ribitol 2-dehydrogenase [EC:1.1.1.56] id=5079533 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
ribitol 2-dehydrogenase rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_661_curated_17
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15898..17316
DNA (1419bp) protein (473aa)
d-arabinitol 4-dehydrogenase-like id=5079532 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
mannitol dehydrogenase domain-containing protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_661_curated_18
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17344..18279
DNA (936bp) protein (312aa)
AraC family transcriptional regulator id=1262090 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
AraC family transcriptional regulator rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_661_curated_19
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18477..19937
DNA (1461bp) protein (487aa)
Xylulokinase id=1262089 bin=GWE1_Burkholderiales_65_30 species=Acidovorax avenae genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
xylulokinase rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_661_curated_20
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19940..20731)
DNA (792bp) protein (264aa)
IclR family transcriptional regulator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MPP4_9BURK rbh
IclR family transcriptional regulator {ECO:0000313|EMBL:EIK91184.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
transcriptional regulator IclR family rbh
S13_scaffold_661_curated_21
unknown

Not on your lists

20855..20956
DNA (102bp) protein (34aa)

This feature has no annotations

S13_scaffold_661_curated_22
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20953..21411
DNA (459bp) protein (153aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
3-dehydroquinate dehydratase n=1 Tax=Polaromonas sp. CF318 RepID=J2LA08_9BURK
3-dehydroquinate dehydratase
S13_scaffold_661_curated_23
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21467..22456
DNA (990bp) protein (330aa)
TRAP-type C4-dicarboxylate transport system, periplasmic component n=1 Tax=Polaromonas sp. CF318 RepID=J3DCC6_9BURK rbh
TRAP dicarboxylate transporter subunit DctP rbh
Tax=RBG_16_Betaproteobacteria_66_20_curated
S13_scaffold_661_curated_24
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22458..22958
DNA (501bp) protein (167aa)
TRAP-type C4-dicarboxylate transport system, small permease component n=1 Tax=Polaromonas sp. CF318 RepID=J2UCM6_9BURK
TRAP C4-dicarboxylate transport system permease DctM
Tax=RBG_16_Betaproteobacteria_66_20_curated
S13_scaffold_661_curated_25
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22955..23989
DNA (1035bp) protein (345aa)
TRAP transporter, DctM subunit n=1 Tax=Polaromonas sp. CF318 RepID=J2LUJ5_9BURK rbh
TRAP transporter, DctM subunit {ECO:0000313|EMBL:EJL89028.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
TRAP dicarboxylate transporter subunit DctM rbh
Displaying 25 items

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