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S13_scaffold_276_curated

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_276_curated_1
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..447
DNA (447bp) protein (149aa)
Aldo/keto reductase id=1262409 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
aldo/keto reductase
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_276_curated_2
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

447..938
DNA (492bp) protein (164aa)
YbaK/ebsC protein id=1262410 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
ybaK/ebsC protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_276_curated_3
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1003..1632
DNA (630bp) protein (210aa)
glycerol-3-phosphate acyltransferase; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15] id=5079851 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
glycerol-3-phosphate acyltransferase rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_276_curated_4
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1629..1985
DNA (357bp) protein (119aa)
endoribonuclease l-psp id=5079852 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
endoribonuclease l-psp
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_276_curated_5
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1990..2640)
DNA (651bp) protein (217aa)
hypothetical protein; K06985 aspartyl protease family protein id=5079853 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_276_curated_6
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2743..3234)
DNA (492bp) protein (164aa)
putative nucleotide-binding protein; K09767 hypothetical protein id=5079854 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
putative nucleotide-binding protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_276_curated_7
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3275..4324
DNA (1050bp) protein (350aa)
UDP-N-acetylenolpyruvoylglucosamine reductase; K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158] id=5079855 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
UDP-N-acetylenolpyruvoylglucosamine reductase rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_276_curated_8
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4367..4969
DNA (603bp) protein (201aa)
signal peptide id=5079856 bin=GWF1_Burkholderiales_GWF1_66_17 species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
signal peptide
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_276_curated_9
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4976..6556
DNA (1581bp) protein (527aa)
hypothetical protein id=5079857 bin=GWF1_Burkholderiales_GWF1_66_17 species=Parvibaculum lavamentivorans genus=Parvibaculum taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_276_curated_10
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6631..7971)
DNA (1341bp) protein (447aa)
argininosuccinate synthase (EC:6.3.4.5) rbh
Argininosuccinate synthase id=1262418 bin=GWE1_Burkholderiales_65_30 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_276_curated_11
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7980..8297)
DNA (318bp) protein (106aa)
UPF0345 protein CARN2_1253 id=1262419 bin=GWE1_Burkholderiales_65_30 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S13_scaffold_276_curated_12
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8356..8703)
DNA (348bp) protein (116aa)
Transcriptional regulator, Spx/MgsR family id=1262420 bin=GWE1_Burkholderiales_65_30 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
arsenate reductase-like protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S13_scaffold_276_curated_13
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8760..9707
DNA (948bp) protein (316aa)
pip; Proline iminopeptidase (PIP) (Prolyl aminopeptidase) (PAP) (EC:3.4.11.5) rbh
Proline iminopeptidase id=1262421 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_276_curated_14
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9738..11087
DNA (1350bp) protein (450aa)
bifunctional folylpolyglutamate synthase/dihydrofolate synthase; K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] id=5079862 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
bifunctional folylpolyglutamate synthase/dihydrofolate synthase rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_276_curated_15
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11164..11922
DNA (759bp) protein (253aa)
sporulation domain-containing protein; K03749 DedD protein id=5079863 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
sporulation domain-containing protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_276_curated_16
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11954..12439
DNA (486bp) protein (162aa)
colicin V production protein; K03558 membrane protein required for colicin V production id=5079864 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
uncharacterized membrane protein, required for colicin V production
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_276_curated_17
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12473..13975
DNA (1503bp) protein (501aa)
amidophosphoribosyltransferase (EC:2.4.2.14); K00764 amidophosphoribosyltransferase [EC:2.4.2.14] id=5079865 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
amidophosphoribosyltransferase (EC:2.4.2.14) rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_276_curated_18
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13983..15191
DNA (1209bp) protein (403aa)
O-succinylhomoserine sulfhydrylase id=1262426 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
cystathionine beta-lyase/cystathionine gamma-synthase
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_276_curated_19
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15278..16666
DNA (1389bp) protein (463aa)
Glutamate--tRNA ligase id=1262427 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
gltX; glutamyl-tRNA ligase rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_276_curated_trna_1
unknown

Not on your lists

16742..16814
DNA (73bp)
transferRNA Ala
S13_scaffold_276_curated_trna_2
unknown

Not on your lists

16893..16965
DNA (73bp)
transferRNA Glu
S13_scaffold_276_curated_trna_3
unknown

Not on your lists

17023..17096
DNA (74bp)
transferRNA Asp
S13_scaffold_276_curated_20
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17203..18111)
DNA (909bp) protein (303aa)
Putative DMT superfamily transporter inner membrane protein {ECO:0000313|EMBL:EWS64171.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
hypothetical protein id=5079868 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein rbh
S13_scaffold_276_curated_21
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18116..18694)
DNA (579bp) protein (193aa)
methylated-DNA--protein-cysteine methyltransferase (EC:2.1.1.63)
Methylated-DNA--protein-cysteine methyltransferase id=1262429 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_276_curated_22
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18691..20235)
DNA (1545bp) protein (515aa)
DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II / transcriptional regulator Ada (EC:3.2.2.21 2.1.1.63); K13529 AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] id=5079870 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II / transcriptional regulator Ada (EC:3.2.2.21 2.1.1.63) rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_276_curated_23
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20343..21725
DNA (1383bp) protein (461aa)
phosphomannomutase (EC:5.4.2.8) rbh
Phosphomannomutase/phosphoglucomutase id=1262431 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_276_curated_24
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21825..23120
DNA (1296bp) protein (432aa)
hypothetical protein id=5079872 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_276_curated_25
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23175..24026
DNA (852bp) protein (284aa)
Hyaluronan synthase {ECO:0000313|EMBL:EWS65428.1}; EC=2.4.1.212 {ECO:0000313|EMBL:EWS65428.1};; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
family 2 glycosyl transferase id=5079873 bin=GWF1_Burkholderiales_GWF1_66_17 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
family 2 glycosyl transferase rbh
S13_scaffold_276_curated_26
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24109..26136)
DNA (2028bp) protein (676aa)
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase; K02527 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] id=5079874 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
3-deoxy-D-manno-octulosonic-acid transferase rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_276_curated_27
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26112..26852)
DNA (741bp) protein (247aa)
glycosyltransferase id=5079875 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
glycosyltransferase rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
Displaying items 1-30 of 50 in total

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