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S13_scaffold_298_curated

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Displaying items 1-30 of 41 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_298_curated_1
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(121..969)
DNA (849bp) protein (283aa)
protocatechuate 4,5-dioxygenase subunit beta (EC:1.13.11.8); K04101 protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8] id=5079412 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_298_curated_2
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(988..1332)
DNA (345bp) protein (115aa)
protocatechuate 4,5-dioxygenase subunit alpha; K04100 protocatechuate 4,5-dioxygenase, alpha chain [EC:1.13.11.8] id=5079411 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase)
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_298_curated_3
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1411..2349
DNA (939bp) protein (313aa)
LysR family transcriptional regulator id=5079410 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
LysR family transcriptional regulator rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_298_curated_4
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2353..3291)
DNA (939bp) protein (313aa)
AraC family transcriptional regulator id=5079409 bin=GWF1_Burkholderiales_GWF1_66_17 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
AraC-type DNA-binding domain-containing protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_298_curated_5
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3403..4581
DNA (1179bp) protein (393aa)
P450 (CYP203A) id=1261967 bin=GWE1_Burkholderiales_65_30 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
cytochrome P450
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_298_curated_6
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4646..4969
DNA (324bp) protein (108aa)
Ferredoxin id=1261966 bin=GWE1_Burkholderiales_65_30 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
ferredoxin
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_298_curated_7
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4966..6210
DNA (1245bp) protein (415aa)
FAD-dependent pyridine nucleotide-disulphide oxidoreductase id=1261965 bin=GWE1_Burkholderiales_65_30 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
FAD-dependent pyridine nucleotide-disulfide oxidoreductase rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_298_curated_8
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6226..6651)
DNA (426bp) protein (142aa)
hypothetical protein; K06934 id=5079405 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_298_curated_9
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6726..8549)
DNA (1824bp) protein (608aa)
arsenite-activated ATPase subunit ArsA (EC:3.6.3.16) rbh
Arsenite efflux ATP-binding protein ArsA id=1261953 bin=GWE1_Burkholderiales_65_30 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_298_curated_10
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8640..10241)
DNA (1602bp) protein (534aa)
ABC-type dipeptide transport system, periplasmic component id=1261952 bin=GWE1_Burkholderiales_65_30 species=Rhizobium leguminosarum genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
ABC transporter substrate-binding protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_298_curated_11
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10295..12511)
DNA (2217bp) protein (739aa)
Peptidase M23 id=5079392 bin=GWF1_Burkholderiales_GWF1_66_17 species=Thiorhodovibrio sp. 970 genus=Thiorhodovibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_298_curated_12
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12532..13956)
DNA (1425bp) protein (475aa)
Orn/DAP/Arg decarboxylase 2; K01586 diaminopimelate decarboxylase [EC:4.1.1.20] id=5079391 bin=GWF1_Burkholderiales_GWF1_66_17 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
diaminopimelate decarboxylase
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_298_curated_13
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13953..15041)
DNA (1089bp) protein (363aa)
hypothetical protein id=5079390 bin=GWF1_Burkholderiales_GWF1_66_17 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
carbamoyl-phosphate-synthetase
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_298_curated_14
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15038..15364)
DNA (327bp) protein (109aa)
id=5079389 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_298_curated_15
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15703..16590
DNA (888bp) protein (296aa)
hypothetical protein id=5079388 bin=GWF1_Burkholderiales_GWF1_66_17 species=Rhizobium leguminosarum genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
dienelactone hydrolase
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_298_curated_16
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16602..17999)
DNA (1398bp) protein (466aa)
integral membrane sensor signal transduction histidine kinase id=5079387 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
integral membrane sensor signal transduction histidine kinase rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_298_curated_17
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17996..18730)
DNA (735bp) protein (245aa)
two component transcriptional regulator id=5079386 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
two component transcriptional regulator rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_298_curated_18
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18705..19061)
DNA (357bp) protein (119aa)
hypothetical protein AradN_20902 id=5079385 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_298_curated_19
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19099..19569)
DNA (471bp) protein (157aa)
hypothetical protein id=5079384 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_298_curated_20
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19639..20610)
DNA (972bp) protein (324aa)
LysR family transcriptional regulator id=5079383 bin=GWF1_Burkholderiales_GWF1_66_17 species=Roseobacter litoralis genus=Roseobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
LysR family transcriptional regulator
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_298_curated_21
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20689..21282
DNA (594bp) protein (198aa)
Uncharacterized protein id=1261941 bin=GWE1_Burkholderiales_65_30 species=Thauera linaloolentis genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline decarboxylase
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_298_curated_22
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21279..22253
DNA (975bp) protein (325aa)
hypothetical protein id=5079381 bin=GWF1_Burkholderiales_GWF1_66_17 species=Bordetella holmesii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
tripartite tricarboxylate transporter receptor family protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_298_curated_23
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22261..22629
DNA (369bp) protein (123aa)
transthyretin family protein id=5079380 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
putative transthyretin family protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_298_curated_24
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22958..24322
DNA (1365bp) protein (455aa)
Putative uncharacterized protein id=1261938 bin=GWE1_Burkholderiales_65_30 species=Cupriavidus pinatubonensis genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
hypothetical protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_298_curated_25
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24416..25750)
DNA (1335bp) protein (445aa)
Ferric reductase domain protein transmembrane component domain protein id=1261937 bin=GWE1_Burkholderiales_65_30 species=Tolumonas auensis genus=Tolumonas taxon_order=Aeromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Ferric reductase domain-containing protein transmembrane component domain-containing protein rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_298_curated_26
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25841..26839)
DNA (999bp) protein (333aa)
aldo/keto reductase id=5079377 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
aldo/keto reductase rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_298_curated_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27006..27956)
DNA (951bp) protein (317aa)
Oxidoreductase domain-containing protein id=1261935 bin=GWE1_Burkholderiales_65_30 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
oxidoreductase domain-containing protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
S13_scaffold_298_curated_28
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27958..28836)
DNA (879bp) protein (293aa)
Protocatechuate 4,5-dioxygenase beta chain id=1261934 bin=GWE1_Burkholderiales_65_30 species=Curvibacter putative symbiont of Hydra magnipapillata genus=Curvibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
protocatechuate 4,5-dioxygenase subunit beta rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_298_curated_29
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28839..29276)
DNA (438bp) protein (146aa)
ligA2; protocatechuate 4,5-dioxygenase subunit alpha (EC:1.13.11.8)
Protocatechuate 4,5-dioxygenase, alpha chain id=1261933 bin=GWE1_Burkholderiales_65_30 species=unknown genus=unknown taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_298_curated_30
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29278..30210)
DNA (933bp) protein (311aa)
amidohydrolase 2; K10221 2-pyrone-4,6-dicarboxylate lactonase [EC:3.1.1.57] id=5079373 bin=GWF1_Burkholderiales_GWF1_66_17 species=Curvibacter putative symbiont of Hydra magnipapillata genus=Curvibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
amidohydrolase 2 rbh
Tax=GWE1_Burkholderiales_65_30_curated
Displaying items 1-30 of 41 in total

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