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S13_scaffold_352_curated

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_352_curated_1
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1742)
DNA (1740bp) protein (580aa)
Methyl-accepting chemotaxis sensory transducer id=1293903 bin=GWE1_Burkholderiales_65_30 species=Hylemonella gracilis genus=Hylemonella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
methyl-accepting chemotaxis sensory transducer rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_352_curated_2
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2020..2700
DNA (681bp) protein (227aa)
hypothetical protein id=5083684 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_352_curated_3
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2692..3273)
DNA (582bp) protein (194aa)
Methionine biosynthesis protein MetW id=1293901 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
methionine biosynthesis protein MetW rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_352_curated_4
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3270..4445)
DNA (1176bp) protein (392aa)
Homoserine O-acetyltransferase id=1293900 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
metX; homoserine acetyltransferase
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_352_curated_5
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4840..5253
DNA (414bp) protein (138aa)
RNA recognition motif-containing protein id=5083681 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
RNA-binding protein with RRM domain
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_352_curated_6
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5445..6707)
DNA (1263bp) protein (421aa)
SoxF id=1293898 bin=GWE1_Burkholderiales_65_30 species=Ralstonia pickettii genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
soxF; uncharacterized NAD(FAD)-dependent dehydrogenase
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_352_curated_7
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6719..7084)
DNA (366bp) protein (122aa)
Cytochrome c, class I id=1293897 bin=GWE1_Burkholderiales_65_30 species=Hylemonella gracilis genus=Hylemonella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
cytochrome c553
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_352_curated_8
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7266..8069)
DNA (804bp) protein (268aa)
short chain dehydrogenase id=5083678 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
short-chain dehydrogenase/reductase sdr rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_352_curated_9
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8102..8752)
DNA (651bp) protein (217aa)
kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; K11719 lipopolysaccharide export system protein LptC id=5083677 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_352_curated_10
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8749..9315)
DNA (567bp) protein (189aa)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; K03270 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] id=5083676 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC:3.1.3.45)
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_352_curated_11
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9446..10444)
DNA (999bp) protein (333aa)
KpsF/GutQ family protein (EC:5.3.1.13) rbh
KpsF/GutQ family protein id=1293893 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_352_curated_12
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10506..12491
DNA (1986bp) protein (662aa)
membrane component of K+ transport systems, Kef type; K03455 monovalent cation:H+ antiporter-2, CPA2 family id=5083674 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
membrane component of K+ transport systems, Kef type rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_352_curated_13
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12562..13107
DNA (546bp) protein (182aa)
adenine phosphoribosyltransferase (EC:2.4.2.7); K00759 adenine phosphoribosyltransferase [EC:2.4.2.7] id=5083673 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hylemonella gracilis genus=Hylemonella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
adenine phosphoribosyltransferase (EC:2.4.2.7)
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_352_curated_14
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13263..13949)
DNA (687bp) protein (229aa)
hypothetical protein id=5083672 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_352_curated_15
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14007..14474)
DNA (468bp) protein (156aa)
cyclic nucleotide-binding domain-containing protein id=5083671 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
cyclic nucleotide-binding domain-containing protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_352_curated_16
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14615..16036)
DNA (1422bp) protein (474aa)
tRNA modification GTPase MnmE id=1293888 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
tRNA modification GTPase TrmE
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_352_curated_17
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16201..17901)
DNA (1701bp) protein (567aa)
protein translocase subunit yidC; K03217 preprotein translocase subunit YidC id=5083669 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
protein translocase subunit yidC rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_352_curated_18
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17898..18185)
DNA (288bp) protein (96aa)
hypothetical protein; K08998 hypothetical protein id=5083668 bin=GWF1_Burkholderiales_GWF1_66_17 species=uncultured bacterium A1Q1_fos_500 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_352_curated_19
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18175..18609)
DNA (435bp) protein (145aa)
RNase P protein component id=1293885 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
ribonuclease P domain-containing protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_352_curated_20
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19048..20454
DNA (1407bp) protein (469aa)
Chromosomal replication initiator protein DnaA id=1293884 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
dnaA; chromosomal replication initiator protein rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_352_curated_21
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20639..21745
DNA (1107bp) protein (369aa)
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7] id=5083664 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
DNA polymerase III subunit beta (EC:2.7.7.7) rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_352_curated_22
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21827..24478
DNA (2652bp) protein (884aa)
DNA gyrase subunit B id=1293882 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
gyrB; DNA gyrase subunit B rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_352_curated_23
CG_Rhodof_03, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24538..25683
DNA (1146bp) protein (382aa)
putative uncharacterized protein
ATPase (AAA+ superfamily)-like protein id=4025051 bin=GWA2_Deltaproteo_65_63 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria rbh
Tax=CG_Rhodof_03
S13_scaffold_352_curated_24
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25740..26021
DNA (282bp) protein (94aa)
Putative transcriptional regulator, XRE family n=1 Tax=Variovorax paradoxus B4 RepID=T1XLS6_VARPD
putative transcriptional regulator, XRE family
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_352_curated_25
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26005..27243
DNA (1239bp) protein (413aa)
phosphatidylinositol kinase n=1 Tax=Curvibacter lanceolatus RepID=UPI000381EEA7 rbh
HipA domain protein rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_352_curated_26
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27373..27678)
DNA (306bp) protein (102aa)
acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7] id=5083660 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
acylphosphatase
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_352_curated_27
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27814..28113
DNA (300bp) protein (100aa)
hypothetical protein id=5083659 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_352_curated_28
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28110..28319)
DNA (210bp) protein (70aa)
id=5083658 bin=GWF1_Burkholderiales_GWF1_66_17 species=Candidatus Accumulibacter phosphatis genus=Candidatus Accumulibacter taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_352_curated_29
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28651..28953
DNA (303bp) protein (101aa)
RNP-1-like RNA-binding protein id=5083657 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
RNP-1 like RNA-binding protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_352_curated_30
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29025..30083)
DNA (1059bp) protein (353aa)
cytidyltransferase-like protein; K13522 bifunctional NMN adenylyltransferase/nudix hydrolase [EC:2.7.7.1 3.6.1.-] id=5083656 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
cytidyltransferase-like protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
Displaying items 1-30 of 35 in total

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