ggKbase home page

S13_scaffold_591_curated

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_591_curated_1
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1253
DNA (1251bp) protein (417aa)
Peptidase S1C, Do id=1274518 bin=GWE1_Burkholderiales_65_30 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
peptidase S1C, Do rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_591_curated_2
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1250..1588
DNA (339bp) protein (113aa)
hypothetical protein id=5082840 bin=GWF1_Burkholderiales_GWF1_66_17 species=Variovorax paradoxus genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
putative membrane protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_591_curated_3
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1687..1911)
DNA (225bp) protein (75aa)
Putative uncharacterized protein id=1274516 bin=GWE1_Burkholderiales_65_30 species=Thiocapsa marina genus=Thiocapsa taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
conserved hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_591_curated_4
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1911..2150)
DNA (240bp) protein (80aa)
Uncharacterized protein id=1274515 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_591_curated_5
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2211..2939
DNA (729bp) protein (243aa)
Cytochrome c id=1274514 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
cytochrome C bihemic (c4 family)
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_591_curated_6
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2936..4195
DNA (1260bp) protein (420aa)
Multiheme (triheme) cytochrome
class I cytochrome c id=5082836 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
class I cytochrome c rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_591_curated_7
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4264..5073
DNA (810bp) protein (270aa)
enoyl-CoA hydratase/isomerase id=5082835 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
enoyl-CoA hydratase/isomerase rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_591_curated_8
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5098..5430)
DNA (333bp) protein (111aa)
hypothetical protein id=5082834 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Delftia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_591_curated_9
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5538..7757)
DNA (2220bp) protein (740aa)
malate synthase G (EC:2.3.3.9) rbh
Malate synthase G id=1274506 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_591_curated_10
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7983..9359)
DNA (1377bp) protein (459aa)
two component sigma-54 specific Fis family transcriptional regulator id=5082828 bin=GWF1_Burkholderiales_GWF1_66_17 species=Curvibacter putative symbiont of Hydra magnipapillata genus=Curvibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
two-component, sigma-54 specific, transcriptional regulator, Fis family
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_591_curated_11
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9384..10781)
DNA (1398bp) protein (466aa)
integral membrane sensor signal transduction histidine kinase id=5082827 bin=GWF1_Burkholderiales_GWF1_66_17 species=Curvibacter putative symbiont of Hydra magnipapillata genus=Curvibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
histidine kinase
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_591_curated_12
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11150..12385
DNA (1236bp) protein (412aa)
Putative acyl-CoA transferase/carnitine dehydratase id=1274503 bin=GWE1_Burkholderiales_65_30 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
L-carnitine dehydratase/bile acid-inducible protein F rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_591_curated_13
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12403..13323
DNA (921bp) protein (307aa)
Hydroxymethylglutaryl-CoA lyase id=1274502 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
hydroxymethylglutaryl-CoA lyase rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_591_curated_14
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13460..13843
DNA (384bp) protein (128aa)
id=5082824 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_591_curated_15
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13988..14920
DNA (933bp) protein (311aa)
LysR family transcriptional regulator id=1274500 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
LysR family transcriptional regulator rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_591_curated_16
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14972..15766
DNA (795bp) protein (265aa)
id=5082822 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_591_curated_17
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15801..16607)
DNA (807bp) protein (269aa)
carbon-nitrogen hydrolase id=5082821 bin=GWF1_Burkholderiales_GWF1_66_17 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
putative hydrolase
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_591_curated_18
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16628..17473)
DNA (846bp) protein (282aa)
monoamine oxidase; K00466 tryptophan 2-monooxygenase [EC:1.13.12.3] id=5082820 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
monoamine oxidase
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Displaying 18 items

View Taxonomy