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S13_scaffold_287_curated

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_287_curated_1
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..458
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2VV80_9BRAD
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_287_curated_2
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(593..1579)
DNA (987bp) protein (329aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WVM9_9BURK rbh
Argininosuccinate lyase {ECO:0000313|EMBL:EWS63586.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
hypothetical protein rbh
S13_scaffold_287_curated_3
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1652..2740)
DNA (1089bp) protein (363aa)
leuB2; 3-isopropylmalate dehydrogenase (EC:1.1.1.85) rbh
Tartrate dehydrogenase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WU88_9BURK rbh
Tartrate dehydrogenase {ECO:0000313|EMBL:EHR69544.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
S13_scaffold_287_curated_4
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2853..3782
DNA (930bp) protein (310aa)
LysR family transcriptional regulator (EC:4.2.1.1) rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACB35434.1}; EC=4.2.1.1 {ECO:0000313|EMBL:ACB35434.1};; Flags: Precursor;; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
Transcriptional regulator, LysR family n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y117_LEPCP rbh
S13_scaffold_287_curated_5
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3859..4833)
DNA (975bp) protein (325aa)
Putative Bug-like extra-cytoplasmic solute receptor, TTT-family n=1 Tax=Variovorax paradoxus B4 RepID=T1XJ99_VARPD rbh
Argininosuccinate lyase {ECO:0000313|EMBL:EWS62644.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
putative Bug-like extra-cytoplasmic solute receptor, TTT-family rbh
S13_scaffold_287_curated_6
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4862..6031)
DNA (1170bp) protein (390aa)
Mandelate racemase {ECO:0000313|EMBL:EWS63881.1}; EC=5.1.2.2 {ECO:0000313|EMBL:EWS63881.1};; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase n=1 Tax=Acidovorax sp. CF316 RepID=J1ECR4_9BURK rbh
putative mandelate racemase/muconate lactonizing enzyme family protein rbh
S13_scaffold_287_curated_7
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6128..7060
DNA (933bp) protein (311aa)
Transcriptional regulator, LysR family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q128M9_POLSJ rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABE45013.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
S13_scaffold_287_curated_8
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7075..7962)
DNA (888bp) protein (296aa)
Pirin-like n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q220J8_RHOFD rbh
Pirin-like protein rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_287_curated_9
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8105..8704)
DNA (600bp) protein (200aa)
azoR; FMN-dependent NADH-azoreductase AzoR (EC:1.7.-.-) rbh
FMN-dependent NADH-azoreductase n=1 Tax=Perlucidibaca piscinae RepID=UPI0003B6ABCA rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_287_curated_10
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8778..9758
DNA (981bp) protein (327aa)
Transcriptional regulator, LysR family n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q220J7_RHOFD rbh
LysR family transcriptional regulator rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_287_curated_11
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9800..10513
DNA (714bp) protein (238aa)
Probable transcriptional regulatory protein Lcho_2376 id=1262685 bin=GWE1_Burkholderiales_65_30 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
hypothetical protein rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S13_scaffold_287_curated_12
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10520..11146)
DNA (627bp) protein (209aa)
lysine exporter protein LysE/YggA family id=5080126 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
lysine exporter protein LysE/YggA family rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_287_curated_13
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11252..11701
DNA (450bp) protein (150aa)
AsnC family transcriptional regulator id=1262687 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
asnC family transcriptional regulator
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_287_curated_14
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11706..12557)
DNA (852bp) protein (284aa)
hypothetical protein id=5080128 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_287_curated_15
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12720..13250)
DNA (531bp) protein (177aa)
flagellar basal body rod protein id=5080129 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
flagellar basal body rod protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_287_curated_16
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13291..13671
DNA (381bp) protein (127aa)
glyoxalase/bleomycin resistance protein/dioxygenase id=5080130 bin=GWF1_Burkholderiales_GWF1_66_17 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
glyoxalase/bleomycin resistance protein/dioxygenase
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_287_curated_17
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13792..14637
DNA (846bp) protein (282aa)
id=5080131 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_287_curated_18
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14678..15394
DNA (717bp) protein (239aa)
Transposase and inactivated derivatives-like n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21VG7_RHOFD
transposase
Transposase and inactivated derivatives-like {ECO:0000313|EMBL:ABD70236.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
S13_scaffold_287_curated_19
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15249..16115)
DNA (867bp) protein (289aa)
hypothetical protein; K15270 S-adenosylmethionine uptake transporter id=5080134 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_287_curated_20
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16130..17029)
DNA (900bp) protein (300aa)
shikimate dehydrogenase (EC:1.1.1.25) rbh
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002FCF9FE rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_287_curated_21
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17108..17584)
DNA (477bp) protein (159aa)
3-dehydroquinate dehydratase id=1262696 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Pseudogulbenkiania taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
aroQ; 3-dehydroquinate dehydratase
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_287_curated_22
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17602..18192)
DNA (591bp) protein (197aa)
TetR family transcriptional regulator id=5080137 bin=GWF1_Burkholderiales_GWF1_66_17 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
TetR family transcriptional regulator
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_287_curated_23
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18480..19463
DNA (984bp) protein (328aa)
Porin Gram-negative type n=1 Tax=Acidovorax sp. NO-1 RepID=H0BWJ7_9BURK
Outer membrane porin protein 32 {ECO:0000313|EMBL:EWS65131.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
porin
S13_scaffold_287_curated_24
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19557..20684
DNA (1128bp) protein (376aa)
hypothetical protein id=5080138 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
putative Lambda repressor-like, DNA-binding
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_287_curated_25
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20715..22292)
DNA (1578bp) protein (526aa)
Acetate CoA-transferase YdiF n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQS4_POLNA rbh
coenzyme A transferase rbh
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
S13_scaffold_287_curated_26
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22306..23469)
DNA (1164bp) protein (388aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQS5_POLNA rbh
acyl-CoA dehydrogenase domain-containing protein rbh
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
S13_scaffold_287_curated_27
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23700..24515)
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002FC511C rbh
xylose isomerase domain-containing protein rbh
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
S13_scaffold_287_curated_28
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24523..25149)
DNA (627bp) protein (209aa)
NIPSNAP family containing protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQS7_POLNA rbh
NIPSNAP family protein rbh
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
S13_scaffold_287_curated_29
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25125..26945)
DNA (1821bp) protein (607aa)
Fumarate reductase/succinate dehydrogenase flavoprotein domain protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQS8_POLNA rbh
putative FAD-binding dehydrogenase rbh
Fumarate reductase/succinate dehydrogenase flavoprotein domain protein {ECO:0000313|EMBL:ABM38006.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
S13_scaffold_287_curated_30
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26950..27783)
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002F8A0D0 rbh
regulatory proteins, IclR rbh
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
Displaying items 1-30 of 46 in total

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