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S13_scaffold_511_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_511_curated_1
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..469)
DNA (468bp) protein (156aa)
l-aspartate oxidase (EC:1.4.3.16)
L-aspartate oxidase id=1274883 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_511_curated_2
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(551..1405)
DNA (855bp) protein (285aa)
condensin subunit ScpA; K05896 segregation and condensation protein A id=5082635 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
condensin subunit ScpA rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_511_curated_3
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1437..1649)
DNA (213bp) protein (71aa)
hypothetical protein id=5082636 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_511_curated_4
Candidatus Accumulibacter sp. SK-02, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1686..2756)
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RM14_ACCPU rbh
Carboxysome shell carbonic anhydrase {ECO:0000313|EMBL:KFB76390.1}; TaxID=1453999 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-02.;"
hypothetical protein rbh
S13_scaffold_511_curated_5
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2782..4425)
DNA (1644bp) protein (548aa)
sulfate transporter; K03321 sulfate permease, SulP family id=5082638 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
sulfate transporter rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_511_curated_6
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4536..5048
DNA (513bp) protein (171aa)
SmpA / OmlA family protein {ECO:0000313|EMBL:EWS64013.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
putative lipoprotein id=5082639 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein
S13_scaffold_511_curated_7
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5055..5795)
DNA (741bp) protein (247aa)
hypothetical protein id=5082640 bin=GWF1_Burkholderiales_GWF1_66_17 species=Burkholderia gladioli genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_511_curated_8
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5802..7856)
DNA (2055bp) protein (685aa)
metG; methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] id=5082641 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
metG; methionyl-tRNA synthetase (EC:6.1.1.10) rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_511_curated_9
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8040..9131
DNA (1092bp) protein (364aa)
Uncharacterized protein id=1274891 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
chromosome partitioning protein ParA rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_511_curated_10
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9202..10941)
DNA (1740bp) protein (580aa)
Type I secretion outer membrane protein, TolC id=1274892 bin=GWE1_Burkholderiales_65_30 species=Nitrosospira multiformis genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
TolC family type I secretion outer membrane protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_511_curated_11
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10947..12293)
DNA (1347bp) protein (449aa)
Type I secretion membrane fusion protein HlyD; K12537 protease secretion protein HasE id=5082644 bin=GWF1_Burkholderiales_GWF1_66_17 species=Nitrosospira multiformis genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
Type I secretion membrane fusion protein HlyD rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_511_curated_12
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12336..14186)
DNA (1851bp) protein (617aa)
Type I secretion system ATPase PrtD; K12536 ATP-binding cassette, subfamily C, bacterial exporter for protease/lipase id=5082645 bin=GWF1_Burkholderiales_GWF1_66_17 species=Janthinobacterium sp. HH01 genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
Type I secretion system ATPase PrtD rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_511_curated_13
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14416..14859
DNA (444bp) protein (148aa)
hypothetical protein id=5082646 bin=GWF1_Burkholderiales_GWF1_66_17 species=Pseudoalteromonas haloplanktis genus=Pseudoalteromonas taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_511_curated_14
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14853..15989)
DNA (1137bp) protein (379aa)
extracellular ligand binding protein id=5082647 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
extracellular ligand binding protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_511_curated_15
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16123..17703)
DNA (1581bp) protein (527aa)
benzoate-CoA ligase (EC:6.2.1.25) rbh
Aryl-Coenzyme A ligase id=1274897 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_511_curated_16
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17855..19432)
DNA (1578bp) protein (526aa)
Aldehyde dehydrogenase id=1274898 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
aldehyde dehydrogenase rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_511_curated_17
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19587..20528
DNA (942bp) protein (314aa)
anaerobic benzoate catabolism transcriptional regulator (EC:2.7.1.71); K15546 XRE family transcriptional regulator, aerobic/anaerobic benzoate catabolism transcriptional regulator id=5082650 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
anaerobic benzoate catabolism transcriptional regulator (EC:2.7.1.71) rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_511_curated_18
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20667..20846
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9HZ70_BORPD
benzoyl-CoA-dihydrodiol lyase
Uncharacterized protein {ECO:0000313|EMBL:CAP43913.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
Displaying 18 items

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