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S13_scaffold_268_curated

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Displaying items 1-30 of 55 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_268_curated_1
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..575)
DNA (573bp) protein (191aa)
hypothetical protein id=5079168 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_268_curated_2
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

689..1318
DNA (630bp) protein (210aa)
pcp; pyrrolidone-carboxylate peptidase (5-oxoprolyl-peptidase); K01304 pyroglutamyl-peptidase [EC:3.4.19.3] id=5079169 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
pcp; pyrrolidone-carboxylate peptidase (5-oxoprolyl-peptidase)
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_268_curated_3
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1356..2066)
DNA (711bp) protein (237aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0C267_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EWS63419.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
hypothetical protein rbh
S13_scaffold_268_curated_4
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2059..2598)
DNA (540bp) protein (180aa)
Uncharacterized protein {ECO:0000313|EMBL:EWS63418.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
XRE family transcriptional regulator id=12550162 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
XRE family transcriptional regulator
S13_scaffold_268_curated_5
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2708..3043)
DNA (336bp) protein (112aa)
hypothetical protein id=5079170 bin=GWF1_Burkholderiales_GWF1_66_17 species=Thiocapsa marina genus=Thiocapsa taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_268_curated_6
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3129..3791)
DNA (663bp) protein (221aa)
glutathione S-transferase (EC:2.5.1.18); K00799 glutathione S-transferase [EC:2.5.1.18] id=5079171 bin=GWF1_Burkholderiales_GWF1_66_17 species=Oceanicola sp. S124 genus=Oceanicola taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
gst2; putative glutathione S-transferase protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_268_curated_7
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3819..4499
DNA (681bp) protein (227aa)
hypothetical protein id=5079172 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Agrobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_268_curated_8
Burkholderia sp. MSh2, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4715..5179)
DNA (465bp) protein (155aa)
Uncharacterized protein n=2 Tax=Burkholderia cenocepacia RepID=A0B3X7_BURCH
Uncharacterized protein {ECO:0000313|EMBL:KEZ06612.1}; TaxID=1506588 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSh2.;"
hypothetical protein
S13_scaffold_268_curated_9
GWA2_Polynucleobacter_45_21_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5189..5671)
DNA (483bp) protein (161aa)
Putative Transcriptional regulator, XRE family id=4831426 bin=GWA2_Polynucleobacter_45_21 species=Candidatus Glomeribacter gigasporarum genus=Candidatus Glomeribacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Polynucleobacter_45_21 organism_group=Betaproteobacteria
XRE family transcriptional regulator
Tax=GWA2_Polynucleobacter_45_21_curated
S13_scaffold_268_curated_10
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5780..6136)
DNA (357bp) protein (119aa)
rhodanese domain-containing protein id=5079173 bin=GWF1_Burkholderiales_GWF1_66_17 species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
rhodanese domain-containing protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_268_curated_11
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6232..6555)
DNA (324bp) protein (108aa)
Putative uncharacterized protein id=1267944 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_268_curated_12
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6712..7665
DNA (954bp) protein (318aa)
response regulator receiver modulated CheW protein; K03415 two-component system, chemotaxis family, response regulator CheV id=5079175 bin=GWF1_Burkholderiales_GWF1_66_17 species=Nitrosomonas sp. genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
response regulator receiver modulated CheW protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_268_curated_13
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7704..8198
DNA (495bp) protein (165aa)
id=5079176 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_268_curated_14
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8360..8788
DNA (429bp) protein (143aa)
hypothetical protein id=5079177 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_268_curated_15
unknown

Not on your lists

comp(8766..8855)
DNA (90bp) protein (30aa)

This feature has no annotations

S13_scaffold_268_curated_16
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8905..9834)
DNA (930bp) protein (310aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus B4 RepID=T1XJV1_VARPD rbh
transcriptional regulator, LysR family rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S13_scaffold_268_curated_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9979..10380
DNA (402bp) protein (134aa)
endoribonuclease L-PSP n=1 Tax=Variovorax paradoxus RepID=UPI00037BB908
putative endonuclease, L-PSP family
Putative endonuclease, L-PSP family {ECO:0000313|EMBL:AGU52857.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
S13_scaffold_268_curated_18
Trichoderma harzianum, Trichoderma, Hypocreales, Hypocreomycetidae, Ascomycota, Fungi

Not on your lists

10706..11584
DNA (879bp) protein (293aa)
AGC/PKA protein kinase {ECO:0000313|EMBL:KKO98255.1}; TaxID=5544 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Hypocreaceae; Trichoderma.;" source="Trichoderma harzianum (Hypocrea lixii).;"
S13_scaffold_268_curated_19
unknown

Not on your lists

comp(11704..11856)
DNA (153bp) protein (51aa)

This feature has no annotations

S13_scaffold_268_curated_20
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11834..12463)
DNA (630bp) protein (210aa)
hypothetical protein id=5079179 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_268_curated_21
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12510..12638)
DNA (129bp) protein (43aa)
Tax=GWA2_Curvibacter_64_110_curated
S13_scaffold_268_curated_22
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12635..12868)
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI00036F1595
addiction module protein
Tax=GWA2_Curvibacter_64_110_curated
S13_scaffold_268_curated_23
unknown

Not on your lists

13166..14329
DNA (1164bp) protein (388aa)

This feature has no annotations

S13_scaffold_268_curated_24
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14385..15002
DNA (618bp) protein (206aa)
Cold-shock DNA-binding protein family id=1267954 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
cold-shock DNA-binding protein family protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_268_curated_25
unknown

Not on your lists

15166..15465
DNA (300bp) protein (100aa)

This feature has no annotations

S13_scaffold_268_curated_26
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15600..15890
DNA (291bp) protein (97aa)
Nerd domain protein id=1267953 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
NERD domain-containing protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_268_curated_27
unknown

Not on your lists

comp(15903..16091)
DNA (189bp) protein (63aa)

This feature has no annotations

S13_scaffold_268_curated_28
Methylophaga thiooxydans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16431..17516)
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Marinobacter sp. ES-1 RepID=U7GN48_9ALTE rbh
RelA/SpoT domain protein {ECO:0000313|EMBL:KGM07461.1}; TaxID=392484 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga thiooxydans.;"
RelA/SpoT domain-containing protein
S13_scaffold_268_curated_29
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17839..19758)
DNA (1920bp) protein (640aa)
KAP P-loop n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21QQ5_RHOFD rbh
KAP P-loop rbh
KAP P-loop {ECO:0000313|EMBL:ABD71898.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
S13_scaffold_268_curated_30
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19831..21684)
DNA (1854bp) protein (618aa)
glutaminyl-tRNA ligase (EC:6.1.1.18) rbh
Glutamine--tRNA ligase id=1267958 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Displaying items 1-30 of 55 in total

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