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S13_scaffold_443_curated

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_443_curated_1
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62..769)
DNA (708bp) protein (236aa)
hypothetical protein id=5081240 bin=GWF1_Burkholderiales_GWF1_66_17 species=Thioflavicoccus mobilis genus=Thioflavicoccus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_443_curated_2
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(778..1302)
DNA (525bp) protein (175aa)
hypothetical protein id=5081239 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_443_curated_3
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1583..3175)
DNA (1593bp) protein (531aa)
putative tail sheath protein; K06907 id=5081238 bin=GWF1_Burkholderiales_GWF1_66_17 species=Thauera sp. 63 genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
phage tail sheath protein FI rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_443_curated_4
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3552..4748
DNA (1197bp) protein (399aa)
GntR family transcriptional regulator (EC:2.6.1.1) id=5081237 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
GntR family transcriptional regulator rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_443_curated_5
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4808..5305
DNA (498bp) protein (166aa)
acetyltransferase (EC:2.3.1.-); K03824 putative acetyltransferase [EC:2.3.1.-] id=5081236 bin=GWF1_Burkholderiales_GWF1_66_17 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
acetyltransferase (EC:2.3.1.-)
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_443_curated_6
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5329..5865
DNA (537bp) protein (179aa)
Flavin reductase-like, FMN-binding id=1265218 bin=GWE1_Burkholderiales_65_30 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
flavin reductase-like protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_443_curated_7
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5972..6571)
DNA (600bp) protein (200aa)
1-acylglycerol-3-phosphate O-acyltransferase {ECO:0000313|EMBL:EWS63959.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
putative acyltransferase id=5081234 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
1-acyl-sn-glycerol-3-phosphate acyltransferase
S13_scaffold_443_curated_8
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6654..7478
DNA (825bp) protein (275aa)
Uncharacterized protein id=1265220 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_443_curated_9
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7475..7690
DNA (216bp) protein (72aa)
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:EWS65276.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
Uncharacterized protein id=1265221 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein
S13_scaffold_443_curated_10
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7721..8275)
DNA (555bp) protein (185aa)
Bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase {ECO:0000313|EMBL:EWS65275.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
NUDIX hydrolase id=1265222 bin=GWE1_Burkholderiales_65_30 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
NUDIX hydrolase rbh
S13_scaffold_443_curated_11
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8362..9414)
DNA (1053bp) protein (351aa)
Neu5Ac-binding protein {ECO:0000313|EMBL:EWS65274.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
TRAP dicarboxylate transporter subunit DctP id=1265223 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
dctP; periplasmic protein rbh
S13_scaffold_443_curated_12
Xanthomonas vesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9547..10179)
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Xanthomonas axonopodis pv. malvacearum str. GSPB1386 RepID=K8G2Y2_9XANT
Uncharacterized protein {ECO:0000313|EMBL:KHM95462.1}; TaxID=56460 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vesicatoria.;"
hypothetical protein
S13_scaffold_443_curated_13
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10176..10550)
DNA (375bp) protein (125aa)
Uncharacterized protein id=5079513 bin=GWF1_Burkholderiales_GWF1_66_17 species=Xanthomonas axonopodis genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_443_curated_14
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10554..11369)
DNA (816bp) protein (272aa)
family 2 glycosyl transferase id=5079514 bin=GWF1_Burkholderiales_GWF1_66_17 species=Xanthomonas axonopodis genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
glycosyl transferase family protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_443_curated_15
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11366..12418)
DNA (1053bp) protein (351aa)
Putative glycosyltransferase n=1 Tax=Acidovorax sp. CF316 RepID=J0U8E2_9BURK rbh
Putative glycosyltransferase {ECO:0000313|EMBL:EJE52357.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
group 2 family glycosyltransferase rbh
S13_scaffold_443_curated_16
unknown

Not on your lists

comp(12411..13745)
DNA (1335bp) protein (445aa)

This feature has no annotations

S13_scaffold_443_curated_17
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13769..14464)
DNA (696bp) protein (232aa)
Fumarylpyruvate hydrolase {ECO:0000313|EMBL:EWS65273.1}; EC=3.7.1.5 {ECO:0000313|EMBL:EWS65273.1};; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
fumarylacetoacetate (FAA) hydrolase id=5081229 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
fumarylacetoacetate (FAA) hydrolase rbh
S13_scaffold_443_curated_18
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14541..14864)
DNA (324bp) protein (108aa)
Rhodocoxin {ECO:0000313|EMBL:EWS65272.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
ferredoxin; K04755 ferredoxin, 2Fe-2S id=5081228 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
ferredoxin
S13_scaffold_443_curated_19
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14870..16348)
DNA (1479bp) protein (493aa)
L-glutamine-synthetase id=1265226 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
glutamine synthetase rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_443_curated_20
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16345..17730)
DNA (1386bp) protein (462aa)
phthalate 4,5-dioxygenase id=5081226 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
phthalate 4,5-dioxygenase rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_443_curated_21
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17810..18529
DNA (720bp) protein (240aa)
GntR family transcriptional regulator; K11475 GntR family transcriptional regulator, vanillate catabolism transcriptional regulator id=5081225 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
GntR family transcriptional regulator rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_443_curated_22
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18709..20334
DNA (1626bp) protein (542aa)
thymidine phosphorylase (EC:2.4.2.4); K00758 thymidine phosphorylase [EC:2.4.2.4] id=5081224 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
thymidine phosphorylase (EC:2.4.2.4) rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_443_curated_23
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20334..21242
DNA (909bp) protein (303aa)
phosphoribosylpyrophosphate synthetase (EC:2.7.6.1) rbh
Ribose-phosphate pyrophosphokinase id=1265230 bin=GWE1_Burkholderiales_65_30 species=Thauera sp. 63 genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_443_curated_24
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21436..23208
DNA (1773bp) protein (591aa)
acsA; acetyl-coenzyme A synthetase; K01895 acetyl-CoA synthetase [EC:6.2.1.1] id=5081222 bin=GWF1_Burkholderiales_GWF1_66_17 species=Novosphingobium pentaromativorans genus=Novosphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
acetyl-CoA synthetase
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_443_curated_25
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23205..24203
DNA (999bp) protein (333aa)
dehydrogenase, E1 component; K11381 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] id=5081221 bin=GWF1_Burkholderiales_GWF1_66_17 species=Novosphingobium pentaromativorans genus=Novosphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
pyruvate dehydrogenase
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_443_curated_26
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24200..25195
DNA (996bp) protein (332aa)
Transketolase central region id=1265233 bin=GWE1_Burkholderiales_65_30 species=Novosphingobium pentaromativorans genus=Novosphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
pyruvate dehydrogenase
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_443_curated_27
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25201..26199
DNA (999bp) protein (333aa)
putative pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase (E2) component (EC:2.3.1.12); K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] id=5081219 bin=GWF1_Burkholderiales_GWF1_66_17 species=Novosphingobium pentaromativorans genus=Novosphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
branched-chain alpha-keto acid dehydrogenase subunit E2
Tax=GWE1_Burkholderiales_65_30_curated
Displaying 27 items

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